Infrared probes for studying the structure and dynamics of biomolecules

H Kim, M Cho - Chemical reviews, 2013 - ACS Publications
The first step toward understanding most of the chemical and biological processes in
condensed phases is to accurately describe solute− solvent interaction energy and to …

Transparent window vibrational probes for the characterization of proteins with high structural and temporal resolution

R Adhikary, J Zimmermann, FE Romesberg - Chemical reviews, 2017 - ACS Publications
Vibrational spectroscopy provides a direct route to the physicochemical characterization of
molecules. While both IR and Raman spectroscopy have been used for decades to provide …

A chemical perspective on allostery

AAST Ribeiro, V Ortiz - Chemical reviews, 2016 - ACS Publications
Much work has been done in the past decade to quantify the phenomenon of allosteric
communication in proteins. Every new study unveils an extra piece of the puzzle in our …

Ballistic and diffusive vibrational energy transport in molecules

IV Rubtsov, AL Burin - The Journal of chemical physics, 2019 - pubs.aip.org
Energy transport in molecules is essential for many areas of science and technology. Strong
covalent bonds of a molecular backbone can facilitate the involvement of the molecule's …

Vibrational energy transport in molecules studied by relaxation-assisted two-dimensional infrared spectroscopy

NI Rubtsova, IV Rubtsov - Annual Review of Physical Chemistry, 2015 - annualreviews.org
This review presents an overview of the relaxation-assisted two-dimensional infrared (RA
2DIR) spectroscopy method for measuring structures and energy transport dynamics in …

Time-resolved spectroscopic mapping of vibrational energy flow in proteins: Understanding thermal diffusion at the nanoscale

Y Mizutani, M Mizuno - The Journal of Chemical Physics, 2022 - pubs.aip.org
Vibrational energy exchange between various degrees of freedom is critical to barrier-
crossing processes in proteins. Hemeproteins are well suited for studying vibrational energy …

Anisotropic energy flow and allosteric ligand binding in albumin

G Li, D Magana, RB Dyer - Nature communications, 2014 - nature.com
Allosteric interactions in proteins generally involve propagation of local structural changes
through the protein to a remote site. Anisotropic energy transport is thought to couple the …

Mode-specific intermolecular vibrational energy transfer. II. Deuterated water and potassium selenocyanate mixture

H Bian, X Wen, J Li, J Zheng - The Journal of chemical physics, 2010 - pubs.aip.org
Vibrational energy transfer is a critical step of molecular reaction dynamics. 1–5 In
condensed phases, whenever a molecular bond is broken, formed, or changed into other …

Nonequilibrium molecular dynamics simulation of the energy transport through a peptide helix

PH Nguyen, SM Park, G Stock - The Journal of chemical physics, 2010 - pubs.aip.org
Recent progress in transient infrared spectroscopy has made it possible to monitor the
transient flow of vibrational energy along a peptide helix [V. Botan et al, Proc. Natl. Acad. Sci …

Constant-speed vibrational signaling along polyethyleneglycol chain up to 60-Å distance

Z Lin, IV Rubtsov - Proceedings of the National Academy of …, 2012 - National Acad Sciences
A series of azido-PEG-succinimide ester oligomers with a number of repeating PEG units of
0, 4, 8, and 12 (azPEG0, 4, 8, and 12) was investigated using a relaxation-assisted two …