Small RNAs in bacteria and archaea: who they are, what they do, and how they do it

EGH Wagner, P Romby - Advances in genetics, 2015 - Elsevier
Small RNAs are ubiquitously present regulators in all kingdoms of life. Most bacterial and
archaeal small RNAs (sRNAs) act by antisense mechanisms on multiple target mRNAs …

Microbial chassis engineering drives heterologous production of complex secondary metabolites

J Liu, X Wang, G Dai, Y Zhang, X Bian - Biotechnology Advances, 2022 - Elsevier
The cryptic secondary metabolite biosynthetic gene clusters (BGCs) far outnumber currently
known secondary metabolites. Heterologous production of secondary metabolite BGCs in …

Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions

U Mäder, P Nicolas, M Depke, J Pané-Farré… - PLoS …, 2016 - journals.plos.org
Staphylococcus aureus is a major pathogen that colonizes about 20% of the human
population. Intriguingly, this Gram-positive bacterium can survive and thrive under a wide …

Synthetic biology toolbox and chassis development in Bacillus subtilis

Y Liu, L Liu, J Li, G Du, J Chen - Trends in biotechnology, 2019 - cell.com
Based on technical advances in the sequencing and synthesis of genetic components as
well as the genome, significant progress has recently been made in developing synthetic …

Metabolic heterogeneity and cross-feeding in bacterial multicellular systems

CR Evans, CP Kempes, A Price-Whelan… - Trends in …, 2020 - cell.com
Cells in assemblages differentiate and perform distinct roles. Though many pathways of
differentiation are understood at the molecular level in multicellular eukaryotes, the …

Engineering of global transcription factors in Bacillus, a genetic tool for increasing product yields: a bioprocess overview

SEM Tolibia, AD Pacheco, SYG Balbuena… - World Journal of …, 2023 - Springer
Transcriptional factors are well studied in bacteria for their global interactions and the effects
they produce at the phenotypic level. Particularly, Bacillus subtilis has been widely …

Noise and epigenetic inheritance of single-cell division times influence population fitness

B Cerulus, AM New, K Pougach, KJ Verstrepen - Current Biology, 2016 - cell.com
The fitness effect of biological noise remains unclear. For example, even within clonal
microbial populations, individual cells grow at different speeds. Although it is known that the …

A new role for CsrA: promotion of complex formation between an sRNA and its mRNA target in Bacillus subtilis

P Müller, M Gimpel, T Wildenhain, S Brantl - RNA biology, 2019 - Taylor & Francis
CsrA is a widely conserved, abundant small RNA binding protein that has been found in E.
coli and other Gram-negative bacteria where it is involved in the regulation of carbon …

Metabolic engineering of Bacillus subtilis fueled by systems biology: recent advances and future directions

Y Liu, J Li, G Du, J Chen, L Liu - Biotechnology advances, 2017 - Elsevier
By combining advanced omics technology and computational modeling, systems biologists
have identified and inferred thousands of regulatory events and system-wide interactions of …

The Sponge RNAs of bacteria–How to find them and their role in regulating the post-transcriptional network

EL Denham - Biochimica et Biophysica Acta (BBA)-Gene Regulatory …, 2020 - Elsevier
In bacteria small regulatory RNAs (sRNAs) interact with their mRNA targets through non-
consecutive base-pairing. The loose base-pairing specificity allows sRNAs to regulate large …