The diversification of methods for studying cell–cell interactions and communication

E Armingol, HM Baghdassarian, NE Lewis - Nature Reviews Genetics, 2024 - nature.com
No cell lives in a vacuum, and the molecular interactions between cells define most
phenotypes. Transcriptomics provides rich information to infer cell–cell interactions and …

Single cell RNA‐sequencing: A powerful yet still challenging technology to study cellular heterogeneity

M Ke, B Elshenawy, H Sheldon, A Arora, FM Buffa - Bioessays, 2022 - Wiley Online Library
Almost all biomedical research to date has relied upon mean measurements from cell
populations, however it is well established that what it is observed at this macroscopic level …

A review of single-cell RNA-Seq annotation, integration, and cell–cell communication

C Cheng, W Chen, H Jin, X Chen - Cells, 2023 - mdpi.com
Single-cell RNA sequencing (scRNA-seq) has emerged as a powerful tool for investigating
cellular biology at an unprecedented resolution, enabling the characterization of cellular …

Computational cell–cell interaction technologies drive mechanistic and biomarker discovery in the tumor microenvironment

A Pong, CK Mah, GW Yeo, NE Lewis - Current Opinion in Biotechnology, 2024 - Elsevier
Highlights•Tumor-immune CCIs can be investigated using scRNA-seq and ST
strategies.•CCI studies elucidate fundamental mechanisms in disease state.•Open-source …

Single‐cell transcriptome sequencing reveals SPP1‐CD44‐mediated macrophage–tumor cell interactions drive chemoresistance in TNBC

F Liu, J Zhang, X Gu, Q Guo… - Journal of Cellular and …, 2024 - Wiley Online Library
Triple‐negative breast cancer (TNBC) is often considered one of the most aggressive
subtypes of breast cancer, characterized by a high recurrence rate and low overall survival …

Deciphering Cell–Cell Interactions with Integrative Single‐Cell Secretion Profiling

L Li, H Su, Y Ji, F Zhu, J Deng, X Bai, H Li… - Advanced …, 2023 - Wiley Online Library
Cell–cell interactions are the fundamental behaviors to regulate cellular activities. A
comprehensive evaluation of intercellular interactions requires direct profiling of various …

[HTML][HTML] Single-cell RNA-sequencing atlas reveals an FABP1-dependent immunosuppressive environment in hepatocellular carcinoma

W Tang, G Sun, GW Ji, T Feng, Q Zhang… - … for Immunotherapy of …, 2023 - ncbi.nlm.nih.gov
Background Single-cell RNA sequencing, also known as scRNA-seq, is a method profiling
cell populations on an individual cell basis. It is particularly useful for more deeply …

Cell-cell interactions in the heart: advanced cardiac models and omics technologies

S Tan, J Yang, S Hu, W Lei - Stem Cell Research & Therapy, 2024 - Springer
A healthy heart comprises various cell types, including cardiomyocytes, endothelial cells,
fibroblasts, immune cells, and among others, which work together to maintain optimal …

The investigation of oncolytic viruses in the field of cancer therapy

Z Yuan, Y Zhang, X Wang, X Wang, S Ren… - Frontiers in …, 2024 - pmc.ncbi.nlm.nih.gov
Oncolytic viruses (OVs) have emerged as a potential strategy for tumor treatment due to their
ability to selectively replicate in tumor cells, induce apoptosis, and stimulate immune …

Apoptosis recognition receptors regulate skin tissue repair in mice

O Justynski, K Bridges, W Krause, MF Forni, QM Phan… - Elife, 2023 - elifesciences.org
Apoptosis and clearance of apoptotic cells via efferocytosis are evolutionarily conserved
processes that drive tissue repair. However, the mechanisms by which recognition and …