Grale: Designing networks for graph learning

J Halcrow, A Mosoi, S Ruth, B Perozzi - Proceedings of the 26th ACM …, 2020 - dl.acm.org
How can we find the right graph for semi-supervised learning? In real world applications, the
choice of which edges to use for computation is the first step in any graph learning process …

A generalized single linkage method for estimating the cluster tree of a density

W Stuetzle, R Nugent - Journal of Computational and Graphical …, 2010 - Taylor & Francis
The goal of clustering is to detect the presence of distinct groups in a dataset and assign
group labels to the observations. Nonparametric clustering is based on the premise that the …

Integrative analysis of longitudinal metabolomics data from a personal multi-omics profile

L Stanberry, GI Mias, W Haynes, R Higdon, M Snyder… - Metabolites, 2013 - mdpi.com
The integrative personal omics profile (iPOP) is a pioneering study that combines genomics,
transcriptomics, proteomics, metabolomics and autoantibody profiles from a single individual …

Sampling algorithms for discrete Markov random fields and related graphical models

AJ Izenman - Journal of the American Statistical Association, 2021 - Taylor & Francis
Discrete Markov random fields are undirected graphical models in which the nodes of a
graph are discrete random variables with values usually represented by colors. Typically …

Universal dynamical properties preclude standard clustering in a large class of biochemical data

F Gomez, RL Stoop, R Stoop - Bioinformatics, 2014 - academic.oup.com
Motivation: Clustering of chemical and biochemical data based on observed features is a
central cognitive step in the analysis of chemical substances, in particular in combinatorial …

A 3D grouped convolutional network fused with conditional random field and its application in image multi-target fine segmentation

J Yin, Z Zhou, S Xu, R Yang, K Liu - International Journal of Computational …, 2022 - Springer
Aiming at the utilization of adjacent image correlation information in multi-target
segmentation of 3D image slices and the optimization of segmentation results, a 3D grouped …

The Gibbs-plaid biclustering model

T Chekouo, A Murua, W Raffelsberger - 2015 - projecteuclid.org
Supplement to “The Gibbs-plaid biclustering model”. A high-resolution version of the image
shown in Figure 6, as well as the complete biclustering results associated with the RD data …

Potts-Cox survival regression

D Martinez-Vargas, A Murua-Sazo - Computational Statistics & Data …, 2023 - Elsevier
A Bayesian semi-parametric survival regression model with latent partitions is introduced. Its
goal is to predict survival and to cluster survival patients within the context of building …

The conditional-Potts clustering model

A Murua, N Wicker - Journal of Computational and Graphical …, 2014 - Taylor & Francis
This article presents a Bayesian kernel-based clustering method. The associated model
arises as an embedding of the Potts density for class membership probabilities into an …

Semiparametric Bayesian regression via Potts model

A Murua, FA Quintana - Journal of Computational and Graphical …, 2017 - Taylor & Francis
We consider Bayesian nonparametric regression through random partition models. Our
approach involves the construction of a covariate-dependent prior distribution on partitions …