Gene regulation in time and space during X-chromosome inactivation

A Loda, S Collombet, E Heard - Nature Reviews Molecular Cell Biology, 2022 - nature.com
X-chromosome inactivation (XCI) is the epigenetic mechanism that ensures X-linked dosage
compensation between cells of females (XX karyotype) and males (XY). XCI is essential for …

Human embryogenesis: a comparative perspective

C Gerri, S Menchero, SK Mahadevaiah… - Annual review of cell …, 2020 - annualreviews.org
Understanding human embryology has historically relied on comparative approaches using
mammalian model organisms. With the advent of low-input methods to investigate genetic …

Sex-biased gene expression across mammalian organ development and evolution

L Rodríguez-Montes, S Ovchinnikova, X Yuan, T Studer… - Science, 2023 - science.org
Sexually dimorphic traits are common among mammals and are specified during
development through the deployment of sex-specific genetic programs. Because little is …

A mouse-specific retrotransposon drives a conserved Cdk2ap1 isoform essential for development

AJ Modzelewski, W Shao, J Chen, A Lee, X Qi, M Noon… - Cell, 2021 - cell.com
Retrotransposons mediate gene regulation in important developmental and pathological
processes. Here, we characterized the transient retrotransposon induction during …

The molecular and nuclear dynamics of X-chromosome inactivation

F Dossin, E Heard - Cold Spring Harbor Perspectives in …, 2022 - cshperspectives.cshlp.org
In female eutherian mammals, dosage compensation of X-linked gene expression is
achieved during development through transcriptional silencing of one of the two X …

Rise and SINE: Roles of transcription factors and retrotransposons in zygotic genome activation

P Kravchenko, K Tachibana - Nature Reviews Molecular Cell Biology, 2024 - nature.com
In sexually reproducing organisms, life begins with the fusion of transcriptionally silent
gametes, the oocyte and sperm. Although initiation of transcription in the embryo, known as …

Elastic dosage compensation by X-chromosome upregulation

A Lentini, H Cheng, JC Noble, N Papanicolaou… - Nature …, 2022 - nature.com
X-chromosome inactivation and X-upregulation are the fundamental modes of chromosome-
wide gene regulation that collectively achieve dosage compensation in mammals, but the …

Mechanisms of choice in X-chromosome inactivation

G Furlan, R Galupa - Cells, 2022 - mdpi.com
Early in development, placental and marsupial mammals harbouring at least two X
chromosomes per nucleus are faced with a choice that affects the rest of their lives: which of …

A hexa-species transcriptome atlas of mammalian embryogenesis delineates metabolic regulation across three different implantation modes

A Malkowska, C Penfold, S Bergmann… - Nature …, 2022 - nature.com
Mammalian embryogenesis relies on glycolysis and oxidative phosphorylation to balance
the generation of biomass with energy production. However, the dynamics of metabolic …

Coordinated changes in gene expression kinetics underlie both mouse and human erythroid maturation

M Barile, I Imaz-Rosshandler, I Inzani, S Ghazanfar… - Genome biology, 2021 - Springer
Background Single-cell technologies are transforming biomedical research, including the
recent demonstration that unspliced pre-mRNA present in single-cell RNA-Seq permits …