Diversity and features of proteins with structural repeats

EI Deryusheva, AV Machulin, OV Galzitskaya - Biophysical Reviews, 2023 - Springer
The review provides information on proteins with structural repeats, including their
classification, characteristics, functions, and relevance in disease development. It explores …

RepeatsDB in 2021: improved data and extended classification for protein tandem repeat structures

L Paladin, M Bevilacqua, S Errigo… - Nucleic Acids …, 2021 - academic.oup.com
The RepeatsDB database (URL: https://repeatsdb. org/) provides annotations and
classification for protein tandem repeat structures from the Protein Data Bank (PDB). Protein …

Protein three-dimensional structures at the origin of life

EJ Milner-White - Interface Focus, 2019 - royalsocietypublishing.org
Proteins are relatively easy to synthesize, compared to nucleic acids and it is likely that there
existed a stage prior to the RNA world which can be called the protein world. Some of the …

Real time structural search of the Protein Data Bank

D Guzenko, SK Burley, JM Duarte - PLoS computational biology, 2020 - journals.plos.org
Detection of protein structure similarity is a central challenge in structural bioinformatics.
Comparisons are usually performed at the polypeptide chain level, however the functional …

Why does the first protein repeat often become the only one?

S Manasra, AV Kajava - Journal of Structural Biology, 2023 - Elsevier
Proteins with two similar motifs in tandem are one of the most common cases of tandem
repeat proteins. The question arises: why is the first emerged repeat frequently fixed in the …

Expanding the repertoire of human tandem repeat RNA-binding proteins

A Ormazábal, MS Carletti, TE Saldaño… - Plos one, 2023 - journals.plos.org
Protein regions consisting of arrays of tandem repeats are known to bind other molecular
partners, including nucleic acid molecules. Although the interactions between repeat …

Limosilactobacillus fermentum 3872 That Produces Class III Bacteriocin Forms Co-Aggregates with the Antibiotic-Resistant Staphylococcus aureus Strains and …

VM Abramov, IV Kosarev, AV Machulin… - Antibiotics, 2023 - mdpi.com
LF3872 was isolated from the milk of a healthy lactating and breastfeeding woman. Earlier,
the genome of LF3872 was sequenced, and a gene encoding unique bacteriocin was …

Detection of rotational symmetry in curves represented by the slope chain code

W Aguilar, M Alvarado-Gonzalez, E Garduno… - Pattern Recognition, 2020 - Elsevier
We present a new approach based on the Slope Chain Code to determine whether a curve
is rotational symmetrical and its order of symmetry. The proposed approach works for open …

[PDF][PDF] Continuity between ancient geochemistry and modern metabolism enabled by non-autocatalytic purine biosynthesis

JE Goldford, HB Smith, LM Longo, BA Wing… - …, 2022 - authors.library.caltech.edu
A major unresolved question in the origin of life is whether there exists a continuous path
from geochemical precursors to the majority of molecules in the biosphere, due in part to the …

Structured Tandem Repeats in Protein Interactions

J Mac Donagh, A Marchesini, A Spiga… - International Journal of …, 2024 - mdpi.com
Tandem repeats (TRs) in protein sequences are consecutive, highly similar sequence
motifs. Some types of TRs fold into structural units that pack together in ensembles, forming …