Single-step genomic evaluations from theory to practice: using SNP chips and sequence data in BLUPF90

D Lourenco, A Legarra, S Tsuruta, Y Masuda, I Aguilar… - Genes, 2020 - mdpi.com
Single-step genomic evaluation became a standard procedure in livestock breeding, and
the main reason is the ability to combine all pedigree, phenotypes, and genotypes available …

Key genetic parameters for population management

R Wellmann, J Bennewitz - Frontiers in Genetics, 2019 - frontiersin.org
Population management has the primary task of maximizing the long-term competitiveness
of a breed. Breeds compete with each other for being able to supply consumer demands at …

Using pre-selected variants from large-scale whole-genome sequence data for single-step genomic predictions in pigs

S Jang, R Ros-Freixedes, JM Hickey, CY Chen… - Genetics Selection …, 2023 - Springer
Background Whole-genome sequence (WGS) data harbor causative variants that may not
be present in standard single nucleotide polymorphism (SNP) chip data. The objective of …

Comparison of conventional BLUP and single-step genomic BLUP evaluations for yearling weight and carcass traits in Hanwoo beef cattle using single trait and multi …

H Mehrban, DH Lee, M Naserkheil, MH Moradi… - PLoS …, 2019 - journals.plos.org
Hanwoo, an important indigenous and popular breed of beef cattle in Korea, shows rapid
growth and has high meat quality. Its yearling weight (YW) and carcass traits (backfat …

Genome-wide association mapping and accuracy of predictions for amoebic gill disease in Atlantic salmon (Salmo salar)

ML Aslam, SA Boison, M Lillehammer, A Norris… - Scientific Reports, 2020 - nature.com
Amoebic gill disease (AGD) is a parasitic disease caused by the amoeba Paramoeba
perurans, which colonizes the gill tissues and causes distress for the host. AGD can cause …

Genome‐wide association study and genomic prediction for intramuscular fat content in Suhuai pigs using imputed whole‐genome sequencing data

B Wang, P Li, L Hou, W Zhou, W Tao… - Evolutionary …, 2022 - Wiley Online Library
Integrating the single‐nucleotide polymorphisms (SNPs) significantly affecting target traits
from imputed whole‐genome sequencing (iWGS) data into the genomic prediction (GP) …

Improving the accuracy of genomic evaluation for linear body measurement traits using single-step genomic best linear unbiased prediction in Hanwoo beef cattle

M Naserkheil, DH Lee, H Mehrban - BMC genetics, 2020 - Springer
Background Recently, there has been a growing interest in the genetic improvement of body
measurement traits in farm animals. They are widely used as predictors of performance …

Efficient weighting methods for genomic best linear-unbiased prediction (BLUP) adapted to the genetic architectures of quantitative traits

D Ren, L An, B Li, L Qiao, W Liu - Heredity, 2021 - nature.com
Genomic best linear-unbiased prediction (GBLUP) assumes equal variance for all marker
effects, which is suitable for traits that conform to the infinitesimal model. For traits controlled …

Genomic prediction using alternative strategies of weighted single-step genomic BLUP for yearling weight and carcass traits in Hanwoo beef cattle

H Mehrban, M Naserkheil, DH Lee, C Cho, T Choi… - Genes, 2021 - mdpi.com
The weighted single-step genomic best linear unbiased prediction (GBLUP) method has
been proposed to exploit information from genotyped and non-genotyped relatives, allowing …

Multi-trait single-step GBLUP improves accuracy of genomic prediction for carcass traits using yearling weight and ultrasound traits in Hanwoo

H Mehrban, M Naserkheil, D Lee… - Frontiers in …, 2021 - frontiersin.org
There has been a growing interest in the genetic improvement of carcass traits as an
important and primary breeding goal in the beef cattle industry over the last few decades …