[HTML][HTML] Elastin-like polypeptides as models of intrinsically disordered proteins

S Roberts, M Dzuricky, A Chilkoti - FEBS letters, 2015 - Elsevier
Elastin-like polypeptides (ELPs) are a class of stimuli-responsive biopolymers inspired by
the intrinsically disordered domains of tropoelastin that are composed of repeats of the …

[HTML][HTML] Molecular simulation of nonfacilitated membrane permeation

E Awoonor-Williams, CN Rowley - Biochimica et Biophysica Acta (BBA) …, 2016 - Elsevier
This is a review. Non-electrolytic compounds typically cross cell membranes by passive
diffusion. The rate of permeation is dependent on the chemical properties of the solute and …

Using collective variables to drive molecular dynamics simulations

G Fiorin, ML Klein, J Hénin - Molecular Physics, 2013 - Taylor & Francis
A software framework is introduced that facilitates the application of biasing algorithms to
collective variables of the type commonly employed to drive massively parallel molecular …

The liquid structure of elastin

S Rauscher, R Pomès - Elife, 2017 - elifesciences.org
The protein elastin imparts extensibility, elastic recoil, and resilience to tissues including
arterial walls, skin, lung alveoli, and the uterus. Elastin and elastin-like peptides are …

A theoretical view of protein dynamics

M Orozco - Chemical Society Reviews, 2014 - pubs.rsc.org
Proteins are fascinating supramolecular structures, which are able to recognize ligands
transforming binding information into chemical signals. They can transfer information across …

Computational approaches to the rational design of nanoemulsions, polymeric micelles, and dendrimers for drug delivery

L Huynh, C Neale, R Pomès, C Allen - … : nanotechnology, biology and …, 2012 - Elsevier
Nanoparticles are promising drug delivery systems whose selection and optimization can be
gainfully conducted by theoretical methods. This review is targeted to experimentalists who …

[HTML][HTML] Sampling errors in free energy simulations of small molecules in lipid bilayers

C Neale, R Pomès - Biochimica et Biophysica Acta (BBA)-Biomembranes, 2016 - Elsevier
Free energy simulations are a powerful tool for evaluating the interactions of molecular
solutes with lipid bilayers as mimetics of cellular membranes. However, these simulations …

Molecular dynamics simulation of small molecules interacting with biological membranes

C Martinotti, L Ruiz‐Perez, E Deplazes… - …, 2020 - Wiley Online Library
Cell membranes protect and compartmentalise cells and their organelles. The semi‐
permeable nature of these membranes controls the exchange of solutes across their …

Demonstrating an order-of-magnitude sampling enhancement in molecular dynamics simulations of complex protein systems

AC Pan, TM Weinreich, S Piana… - Journal of chemical …, 2016 - ACS Publications
Molecular dynamics (MD) simulations can describe protein motions in atomic detail, but
transitions between protein conformational states sometimes take place on time scales that …

Structural disorder and protein elasticity

S Rauscher, R Pomès - Fuzziness: Structural disorder in protein …, 2012 - Springer
An emerging class of disordered proteins underlies the elasticity of many biological tissues.
Elastomeric proteins are essential to the function of biological machinery as diverse as the …