Multi-atlas segmentation of biomedical images: a survey

JE Iglesias, MR Sabuncu - Medical image analysis, 2015 - Elsevier
Abstract Multi-atlas segmentation (MAS), first introduced and popularized by the pioneering
work of Rohlfing, et al.(2004), Klein, et al.(2005), and Heckemann, et al.(2006), is becoming …

3D whole brain segmentation using spatially localized atlas network tiles

Y Huo, Z Xu, Y Xiong, K Aboud, P Parvathaneni, S Bao… - NeuroImage, 2019 - Elsevier
Detailed whole brain segmentation is an essential quantitative technique in medical image
analysis, which provides a non-invasive way of measuring brain regions from a clinical …

Consistent cortical reconstruction and multi-atlas brain segmentation

Y Huo, AJ Plassard, A Carass, SM Resnick, DL Pham… - NeuroImage, 2016 - Elsevier
Whole brain segmentation and cortical surface reconstruction are two essential techniques
for investigating the human brain. Spatial inconsistences, which can hinder further …

Anatomical context improves deep learning on the brain age estimation task

C Bermudez, AJ Plassard, S Chaganti, Y Huo… - Magnetic Resonance …, 2019 - Elsevier
Deep learning has shown remarkable improvements in the analysis of medical images
without the need for engineered features. In this work, we hypothesize that deep learning is …

Hippocampal network modularity is associated with relational memory dysfunction in schizophrenia

SN Avery, BP Rogers, S Heckers - Biological Psychiatry: Cognitive …, 2018 - Elsevier
Background Functional dysconnectivity has been proposed as a major pathophysiological
mechanism for cognitive dysfunction in schizophrenia. The hippocampus is a focal point of …

Disrupted habituation in the early stage of psychosis

SN Avery, M McHugo, K Armstrong, JU Blackford… - Biological Psychiatry …, 2019 - Elsevier
Background Learning and memory are impaired in schizophrenia. Some theories have
proposed that one form of memory, habituation, is particularly impaired. Preliminary …

Multi-atlas learner fusion: An efficient segmentation approach for large-scale data

AJ Asman, Y Huo, AJ Plassard, BA Landman - Medical image analysis, 2015 - Elsevier
We propose multi-atlas learner fusion (MLF), a framework for rapidly and accurately
replicating the highly accurate, yet computationally expensive, multi-atlas segmentation …

Hierarchical performance estimation in the statistical label fusion framework

AJ Asman, BA Landman - Medical image analysis, 2014 - Elsevier
Label fusion is a critical step in many image segmentation frameworks (eg, multi-atlas
segmentation) as it provides a mechanism for generalizing a collection of labeled examples …

Stable habituation deficits in the early stage of psychosis: a 2-year follow-up study

SN Avery, M McHugo, K Armstrong… - Translational …, 2021 - nature.com
Neural habituation, the decrease in brain response to repeated stimuli, is a fundamental,
highly conserved mechanism that acts as an essential filter for our complex sensory …

OpenMAP-T1: A Rapid Deep Learning Approach to Parcellate 280 Anatomical Regions to Cover the Whole Brain

K Nishimaki, K Onda, K Ikuta, Y Uchida, S Mori… - medRxiv, 2024 - medrxiv.org
This study introduces OpenMAP-T1, a deep-learning-based method for rapid and accurate
whole-brain parcellation in T1-weighted brain MRI, which aims to overcome the limitations of …