Whole-genome duplication and plant macroevolution

JW Clark, PCJ Donoghue - Trends in plant science, 2018 - cell.com
Whole-genome duplication (WGD) is characteristic of almost all fundamental lineages of
land plants. Unfortunately, the timings of WGD events are loosely constrained and …

Deep reticulation: the long legacy of hybridization in vascular plant evolution

GW Stull, KK Pham, PS Soltis, DE Soltis - The Plant Journal, 2023 - Wiley Online Library
Hybridization has long been recognized as a fundamental evolutionary process in plants
but, until recently, our understanding of its phylogenetic distribution and biological …

The evolutionary history of ferns inferred from 25 low‐copy nuclear genes

CJ Rothfels, FW Li, EM Sigel, L Huiet… - American Journal of …, 2015 - Wiley Online Library
• Premise of the study: Understanding fern (monilophyte) phylogeny and its evolutionary
timescale is critical for broad investigations of the evolution of land plants, and for providing …

Supervised machine learning reveals introgressed loci in the genomes of Drosophila simulans and D. sechellia

DR Schrider, J Ayroles, DR Matute, AD Kern - PLoS genetics, 2018 - journals.plos.org
Hybridization and gene flow between species appears to be common. Even though it is
clear that hybridization is widespread across all surveyed taxonomic groups, the magnitude …

A need for standardized reporting of introgression: Insights from studies across eukaryotes

AJ Dagilis, D Peede, JM Coughlan, GI Jofre… - Evolution …, 2022 - academic.oup.com
With the rise of affordable next-generation sequencing technology, introgression—or the
exchange of genetic materials between taxa—has become widely perceived to be a …

Next‐generation polyploid phylogenetics: Rapid resolution of hybrid polyploid complexes using PacBio single‐molecule sequencing

CJ Rothfels, KM Pryer, FW Li - New Phytologist, 2017 - Wiley Online Library
Difficulties in generating nuclear data for polyploids have impeded phylogenetic study of
these groups. We describe a high‐throughput protocol and an associated bioinformatics …

The syngameon enigma

R Buck, L Flores-Rentería - Plants, 2022 - mdpi.com
Despite their evolutionary relevance, multispecies networks or syngameons are rarely
reported in the literature. Discovering how syngameons form and how they are maintained …

Deep ancestral introgression shapes evolutionary history of dragonflies and damselflies

A Suvorov, C Scornavacca, MS Fujimoto… - Systematic …, 2022 - academic.oup.com
Introgression is an important biological process affecting at least 10% of the extant species
in the animal kingdom. Introgression significantly impacts inference of phylogenetic species …

A consensus phylogenomic approach highlights paleopolyploid and rapid radiation in the history of Ericales

DA Larson, JF Walker, OM Vargas… - American Journal of …, 2020 - Wiley Online Library
Premise Large genomic data sets offer the promise of resolving historically recalcitrant
species relationships. However, different methodologies can yield conflicting results …

Hybridization and the coexistence of species

D Irwin, D Schluter - The American Naturalist, 2022 - journals.uchicago.edu
It is thought that two species can coexist if they use different resources present in the
environment, yet this assumes that species are completely reproductively isolated. We …