The library of integrated network-based cellular signatures NIH program: system-level cataloging of human cells response to perturbations

AB Keenan, SL Jenkins, KM Jagodnik, S Koplev, E He… - Cell systems, 2018 - cell.com
The Library of Integrated Network-Based Cellular Signatures (LINCS) is an NIH Common
Fund program that catalogs how human cells globally respond to chemical, genetic, and …

The comparative toxicogenomics database: update 2019

AP Davis, CJ Grondin, RJ Johnson… - Nucleic acids …, 2019 - academic.oup.com
Abstract The Comparative Toxicogenomics Database (CTD; http://ctdbase. org/) is a premier
public resource for literature-based, manually curated associations between chemicals …

Towards a standardized bioinformatics infrastructure for N- and O-glycomics

MA Rojas-Macias, J Mariethoz, P Andersson… - Nature …, 2019 - nature.com
The mass spectrometry (MS)-based analysis of free polysaccharides and glycans released
from proteins, lipids and proteoglycans increasingly relies on databases and software. Here …

The comparative toxicogenomics database: update 2017

AP Davis, CJ Grondin, RJ Johnson… - Nucleic acids …, 2017 - academic.oup.com
Abstract The Comparative Toxicogenomics Database (CTD; http://ctdbase. org/) provides
information about interactions between chemicals and gene products, and their …

[HTML][HTML] exRNA atlas analysis reveals distinct extracellular RNA cargo types and their carriers present across human biofluids

OD Murillo, W Thistlethwaite, J Rozowsky… - Cell, 2019 - cell.com
To develop a map of cell-cell communication mediated by extracellular RNA (exRNA), the
NIH Extracellular RNA Communication Consortium created the exRNA Atlas resource …

FAIRsharing as a community approach to standards, repositories and policies

SA Sansone, P McQuilton, P Rocca-Serra… - Nature …, 2019 - nature.com
How and when these regulatory gaps are closed could have profound consequences for the
marine biotech industry. The reach of the Nagoya Protocol into digital sequence information …

Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response …

A Koleti, R Terryn, V Stathias, C Chung… - Nucleic acids …, 2018 - academic.oup.com
Abstract The Library of Integrated Network-based Cellular Signatures (LINCS) program is a
national consortium funded by the NIH to generate a diverse and extensive reference library …

Genomes OnLine Database (GOLD) v. 6: data updates and feature enhancements

S Mukherjee, D Stamatis, J Bertsch… - Nucleic acids …, 2016 - academic.oup.com
Abstract The Genomes Online Database (GOLD)(https://gold. jgi. doe. gov) is a manually
curated data management system that catalogs sequencing projects with associated …

Reproducible and reusable research: are journal data sharing policies meeting the mark?

NA Vasilevsky, J Minnier, MA Haendel, RE Champieux - PeerJ, 2017 - peerj.com
Background There is wide agreement in the biomedical research community that research
data sharing is a primary ingredient for ensuring that science is more transparent and …

DATS, the data tag suite to enable discoverability of datasets

SA Sansone, A Gonzalez-Beltran, P Rocca-Serra… - Scientific data, 2017 - nature.com
Today's science increasingly requires effective ways to find and access existing datasets
that are distributed across a range of repositories. For researchers in the life sciences …