Stochastic models of intracellular transport

PC Bressloff, JM Newby - Reviews of Modern Physics, 2013 - APS
The interior of a living cell is a crowded, heterogenuous, fluctuating environment. Hence, a
major challenge in modeling intracellular transport is to analyze stochastic processes within …

From first-passage times of random walks in confinement to geometry-controlled kinetics

O Bénichou, R Voituriez - Physics Reports, 2014 - Elsevier
We present a general theory which allows one to accurately evaluate the mean first-passage
time (FPT) for regular random walks in bounded domains, and its extensions to related first …

[图书][B] Stochastic processes in cell biology

PC Bressloff - 2014 - Springer
One of the major challenges in modern biology is to understand how the molecular
components of a living cell operate in a highly noisy environment. What are the specific …

The narrow escape problem for diffusion in cellular microdomains

Z Schuss, A Singer, D Holcman - Proceedings of the …, 2007 - National Acad Sciences
The study of the diffusive motion of ions or molecules in confined biological microdomains
requires the derivation of the explicit dependence of quantities, such as the decay rate of the …

The narrow escape problem

D Holcman, Z Schuss - siam REVIEW, 2014 - SIAM
The narrow escape problem in diffusion theory is to calculate the mean first passage time of
a diffusion process to a small target on the reflecting boundary of a bounded domain. The …

An asymptotic analysis of the mean first passage time for narrow escape problems: Part II: The sphere

AF Cheviakov, MJ Ward, R Straube - Multiscale Modeling & Simulation, 2010 - SIAM
The mean first passage time (MFPT) is calculated for a Brownian particle in a spherical
domain in R^3 that contains N small nonoverlapping absorbing windows, or traps, on its …

An asymptotic analysis of the mean first passage time for narrow escape problems: Part I: Two-dimensional domains

S Pillay, MJ Ward, A Peirce, T Kolokolnikov - Multiscale Modeling & …, 2010 - SIAM
The mean first passage time (MFPT) is calculated for a Brownian particle in a bounded two-
dimensional domain that contains N small nonoverlapping absorbing windows on its …

Stochastic narrow escape in molecular and cellular biology

D Holcman, Z Schuss - Analysis and Applications. Springer, New York, 2015 - Springer
This monograph consists of two main parts, mathematical and biological. The mathematical
part, which is quite sophisticated involving advanced asymptotic methods in partial …

Narrow-Escape Time Problem: Time Needed for a Particle to Exit a Confining Domain<? format?> through a Small Window

O Bénichou, R Voituriez - Physical review letters, 2008 - APS
The time needed for a particle to exit a confining domain through a small window, called the
narrow-escape time (NET), is a limiting factor of various processes, such as some …

Optimal reaction time for surface-mediated diffusion

O Bénichou, D Grebenkov, P Levitz, C Loverdo… - Physical review …, 2010 - APS
We present an exact calculation of the mean first-passage time to a small target on the
surface of a 2D or 3D spherical domain, for a molecule performing surface-mediated …