The structure is the message: Preserving experimental context through tensor decomposition

ZC Tan, AS Meyer - Cell Systems, 2024 - cell.com
Recent biological studies have been revolutionized in scale and granularity by multiplex and
high-throughput assays. Profiling cell responses across several experimental parameters …

Coordinated, multicellular patterns of transcriptional variation that stratify patient cohorts are revealed by tensor decomposition

J Mitchel, MG Gordon, RK Perez, E Biederstedt… - Nature …, 2024 - nature.com
Tissue-level and organism-level biological processes often involve the coordinated action of
multiple distinct cell types. The recent application of single-cell assays to many individuals …

Tensor decomposition for analysing time-evolving social networks: An overview

S Fernandes, H Fanaee-T, J Gama - Artificial Intelligence Review, 2021 - Springer
Social networks are becoming larger and more complex as new ways of collecting social
interaction data arise (namely from online social networks, mobile devices sensors,...) …

[HTML][HTML] Linking excess mortality to mobility data during the first wave of COVID-19 in England and Wales

U Basellini, D Alburez-Gutierrez, E Del Fava… - SSM-Population …, 2021 - Elsevier
Non-pharmaceutical interventions have been implemented worldwide to curb the spread of
COVID-19. However, the effectiveness of such governmental measures in reducing the …

Higher-order networks representation and learning: A survey

H Tian, R Zafarani - ACM SIGKDD Explorations Newsletter, 2024 - dl.acm.org
Network data has become widespread, larger, and more complex over the years. Traditional
network data is dyadic, capturing the relations among pairs of entities. With the need to …

Community detection on mixture multilayer networks via regularized tensor decomposition

BY Jing, T Li, Z Lyu, D Xia - The Annals of Statistics, 2021 - projecteuclid.org
Community detection on mixture multilayer networks via regularized tensor decomposition
Page 1 The Annals of Statistics 2021, Vol. 49, No. 6, 3181–3205 https://doi.org/10.1214/21-AOS2079 …

Quantifying stimulus-response specificity to probe the functional state of macrophages

KM Sheu, AA Guru, A Hoffmann - Cell systems, 2023 - cell.com
Immune sentinel macrophages initiate responses to pathogens via hundreds of immune
response genes. Each immune threat demands a tailored response, suggesting that the …

[PDF][PDF] Three-Way Correspondence Analysis in R.

R Lombardo, M van de Velden, EJ Beh - R J., 2023 - researchgate.net
Three-way correspondence analysis is a suitable multivariate method for visualising the
association in three-way categorical data, modelling the global dependence, or reducing …

Multilayer random dot product graphs: Estimation and online change point detection

F Wang, W Li, OHM Padilla, Y Yu, A Rinaldo - arXiv preprint arXiv …, 2023 - arxiv.org
In this paper, we first introduce the multilayer random dot product graph (MRDPG) model,
which can be seen as an extension of the random dot product graph model to multilayer …

Tensor decomposition reveals coordinated multicellular patterns of transcriptional variation that distinguish and stratify disease individuals

J Mitchel, MG Gordon, RK Perez, E Biederstedt… - BioRxiv, 2022 - biorxiv.org
Tissue-and organism-level biological processes often involve coordinated action of multiple
distinct cell types. Current computational methods for the analysis of single-cell RNA …