Descriptors and their selection methods in QSAR analysis: paradigm for drug design

AU Khan - Drug discovery today, 2016 - Elsevier
Highlights•A few newly introduced molecular descriptors were discussed.•Various
computational approaches to calculate the descriptors are listed.•We described several …

Exploring G protein-coupled receptors (GPCRs) ligand space via cheminformatics approaches: impact on rational drug design

S Basith, M Cui, SJY Macalino, J Park… - Frontiers in …, 2018 - frontiersin.org
The primary goal of rational drug discovery is the identification of selective ligands which act
on single or multiple drug targets to achieve the desired clinical outcome through the …

Recent advances in machine-learning-based chemoinformatics: a comprehensive review

SK Niazi, Z Mariam - International Journal of Molecular Sciences, 2023 - mdpi.com
In modern drug discovery, the combination of chemoinformatics and quantitative structure–
activity relationship (QSAR) modeling has emerged as a formidable alliance, enabling …

Machine learning-based virtual screening and its applications to Alzheimer's drug discovery: a review

KA Carpenter, X Huang - Current pharmaceutical design, 2018 - ingentaconnect.com
Background: Virtual Screening (VS) has emerged as an important tool in the drug
development process, as it conducts efficient in silico searches over millions of compounds …

Computer-aided drug design and drug discovery: a prospective analysis

SK Niazi, Z Mariam - Pharmaceuticals, 2023 - mdpi.com
In the dynamic landscape of drug discovery, Computer-Aided Drug Design (CADD) emerges
as a transformative force, bridging the realms of biology and technology. This paper …

Virtual screening techniques in drug discovery: review and recent applications

SFL da Silva Rocha, CG Olanda… - Current topics in …, 2019 - ingentaconnect.com
The discovery of bioactive molecules is an expensive and time-consuming process and new
strategies are continuously searched for in order to optimize this process. Virtual Screening …

Polypharmacology browser PPB2: target prediction combining nearest neighbors with machine learning

M Awale, JL Reymond - Journal of chemical information and …, 2018 - ACS Publications
Here we report PPB2 as a target prediction tool assigning targets to a query molecule based
on ChEMBL data. PPB2 computes ligand similarities using molecular fingerprints encoding …

[HTML][HTML] Machine learning and AI-based approaches for bioactive ligand discovery and GPCR-ligand recognition

S Raschka, B Kaufman - Methods, 2020 - Elsevier
In the last decade, machine learning and artificial intelligence applications have received a
significant boost in performance and attention in both academic research and industry. The …

Accuracy or novelty: what can we gain from target-specific machine-learning-based scoring functions in virtual screening?

C Shen, G Weng, X Zhang, ELH Leung… - Briefings in …, 2021 - academic.oup.com
Abstract Machine-learning (ML)-based scoring functions (MLSFs) have gradually emerged
as a promising alternative for protein–ligand binding affinity prediction and structure-based …

How good are publicly available web services that predict bioactivity profiles for drug repurposing?

KA Murtazalieva, DS Druzhilovskiy… - SAR and QSAR in …, 2017 - Taylor & Francis
Drug repurposing provides a non-laborious and less expensive way for finding new human
medicines. Computational assessment of bioactivity profiles shed light on the hidden …