Machine learning approaches to drug response prediction: challenges and recent progress

G Adam, L Rampášek, Z Safikhani, P Smirnov… - NPJ precision …, 2020 - nature.com
Cancer is a leading cause of death worldwide. Identifying the best treatment using
computational models to personalize drug response prediction holds great promise to …

Machine learning and feature selection for drug response prediction in precision oncology applications

M Ali, T Aittokallio - Biophysical reviews, 2019 - Springer
In-depth modeling of the complex interplay among multiple omics data measured from
cancer cell lines or patient tumors is providing new opportunities toward identification of …

oncoPredict: an R package for predicting in vivo or cancer patient drug response and biomarkers from cell line screening data

D Maeser, RF Gruener, RS Huang - Briefings in bioinformatics, 2021 - academic.oup.com
Cell line drug screening datasets can be utilized for a range of different drug discovery
applications from drug biomarker discovery to building translational models of drug …

Gene expression based inference of cancer drug sensitivity

S Chawla, A Rockstroh, M Lehman, E Ratther… - Nature …, 2022 - nature.com
Inter and intra-tumoral heterogeneity are major stumbling blocks in the treatment of cancer
and are responsible for imparting differential drug responses in cancer patients. Recently …

Biomimetic hydrogel supports initiation and growth of patient-derived breast tumor organoids

E Prince, J Cruickshank, W Ba-Alawi… - Nature …, 2022 - nature.com
Patient-derived tumor organoids (PDOs) are a highly promising preclinical model that
recapitulates the histology, gene expression, and drug response of the donor patient tumor …

Optimization of cell viability assays to improve replicability and reproducibility of cancer drug sensitivity screens

P Larsson, H Engqvist, J Biermann… - Scientific reports, 2020 - nature.com
Cancer drug development has been riddled with high attrition rates, in part, due to poor
reproducibility of preclinical models for drug discovery. Poor experimental design and lack of …

Deep-Resp-Forest: a deep forest model to predict anti-cancer drug response

R Su, X Liu, L Wei, Q Zou - Methods, 2019 - Elsevier
The identification of therapeutic biomarkers predictive of drug response is crucial in
personalized medicine. A number of computational models to predict response of anti …

Pharmacogenomic landscape of patient-derived tumor cells informs precision oncology therapy

JK Lee, Z Liu, JK Sa, S Shin, J Wang, M Bordyuh… - Nature …, 2018 - nature.com
Outcomes of anticancer therapy vary dramatically among patients due to diverse genetic
and molecular backgrounds, highlighting extensive intertumoral heterogeneity. The …

Deep learning methods for drug response prediction in cancer: predominant and emerging trends

A Partin, TS Brettin, Y Zhu, O Narykov, A Clyde… - Frontiers in …, 2023 - frontiersin.org
Cancer claims millions of lives yearly worldwide. While many therapies have been made
available in recent years, by in large cancer remains unsolved. Exploiting computational …

[HTML][HTML] Machine learning in the prediction of cancer therapy

R Rafique, SMR Islam, JU Kazi - Computational and Structural …, 2021 - Elsevier
Resistance to therapy remains a major cause of cancer treatment failures, resulting in many
cancer-related deaths. Resistance can occur at any time during the treatment, even at the …