Applications of genetic programming in cancer research

WP Worzel, J Yu, AA Almal, AM Chinnaiyan - The international journal of …, 2009 - Elsevier
The theory of Darwinian evolution is the fundamental keystones of modern biology. Late in
the last century, computer scientists began adapting its principles, in particular natural …

Prediction of cancer class with majority voting genetic programming classifier using gene expression data

TK Paul, H Iba - IEEE/ACM Transactions on Computational …, 2008 - ieeexplore.ieee.org
In order to get a better understanding of different types of cancers and to find the possible
biomarkers for diseases, recently, many researchers are analyzing the gene expression …

The use of genetic programming in the analysis of quantitative gene expression profiles for identification of nodal status in bladder cancer

AP Mitra, AA Almal, B George, DW Fry, PF Lenehan… - BMC cancer, 2006 - Springer
Background Previous studies on bladder cancer have shown nodal involvement to be an
independent indicator of prognosis and survival. This study aimed at developing an …

Introduction to 20 years of grammatical evolution

C Ryan, M O'Neill, JJ Collins - Handbook of grammatical evolution, 2018 - Springer
Grammatical Evolution (GE) is a Evolutionary Algorithm (EA) that takes inspiration from the
biological evolutionary process to search for solutions to problems. This chapter gives a brief …

An evolutionary algorithm approach for feature generation from sequence data and its application to DNA splice site prediction

U Kamath, J Compton, R Islamaj-Doğan… - IEEE/ACM …, 2012 - ieeexplore.ieee.org
Associating functional information with biological sequences remains a challenge for
machine learning methods. The performance of these methods often depends on deriving …

Improving feature ranking for biomarker discovery in proteomics mass spectrometry data using genetic programming

S Ahmed, M Zhang, L Peng - Connection Science, 2014 - Taylor & Francis
Feature selection on mass spectrometry (MS) data is essential for improving classification
performance and biomarker discovery. The number of MS samples is typically very small …

Developing non-linear rate constant QSPR using decision trees and multi-gene genetic programming

S Datta, VA Dev, MR Eden - Computers & Chemical Engineering, 2019 - Elsevier
Developing a QSPR model, which not only captures the influence of reactant structures but
also the solvent effect on reaction rate, is of significance. Such QSPR models will serve as a …

Classification of gene expression data by majority voting genetic programming classifier

TK Paul, Y Hasegawa, H Iba - 2006 IEEE International …, 2006 - ieeexplore.ieee.org
Recently, genetic programming (GP) has been applied to the classification of gene
expression data. In its typical implementation, using training data, a single rule or a single …

Comparative genome analysis of a large Dutch Legionella pneumophila strain collection identifies five markers highly correlated with clinical strains

E Yzerman, JW Den Boer, M Caspers, A Almal… - BMC genomics, 2010 - Springer
Background Discrimination between clinical and environmental strains within many bacterial
species is currently underexplored. Genomic analyses have clearly shown the enormous …

Gene expression analysis based on ant colony optimisation classification

G Schaefer - International Journal of Rough Sets and Data Analysis …, 2016 - igi-global.com
Microarray studies and gene expression analysis have received significant attention over
the last few years and provide many promising avenues towards the understanding of …