Rapid genomic diagnosis of fungal infections in the age of next-generation sequencing

CC Tsang, JLL Teng, SKP Lau, PCY Woo - Journal of Fungi, 2021 - mdpi.com
Next-generation sequencing (NGS) technologies have recently developed beyond the
research realm and started to mature into clinical applications. Here, we review the current …

Recent trends in molecular diagnostics of yeast infections: from PCR to NGS

T Gabaldón - FEMS Microbiology Reviews, 2019 - academic.oup.com
The incidence of opportunistic yeast infections in humans has been increasing over recent
years. These infections are difficult to treat and diagnose, in part due to the large number …

Clinical evaluation of an improved metagenomic next-generation sequencing test for the diagnosis of bloodstream infections

C Jing, H Chen, Y Liang, Y Zhong, Q Wang… - Clinical …, 2021 - academic.oup.com
Background Metagenomic next-generation sequencing (mNGS) of plasma cell-free DNA
has emerged as a promising diagnostic technology for bloodstream infections. However, a …

[HTML][HTML] Enhanced performance of next-generation sequencing diagnostics compared with standard of care microbiological diagnostics in patients suffering from …

S Grumaz, C Grumaz, Y Vainshtein… - Critical care …, 2019 - journals.lww.com
Objectives: Culture-based diagnostics represent the standard of care in septic patients, but
are highly insensitive and in many cases unspecific. We recently demonstrated the general …

The early identification of disease progression in patients with suspected infection presenting to the emergency department: a multi-centre derivation and validation …

K Saeed, DC Wilson, F Bloos, P Schuetz… - Critical Care, 2019 - Springer
Background There is a lack of validated tools to assess potential disease progression and
hospitalisation decisions in patients presenting to the emergency department (ED) with a …

The use of mid-regional proadrenomedullin to identify disease severity and treatment response to sepsis-a secondary analysis of a large randomised controlled trial

G Elke, F Bloos, DC Wilson, FM Brunkhorst, J Briegel… - Critical Care, 2018 - Springer
Background This study assessed the ability of mid-regional proadrenomedullin (MR-
proADM) in comparison to conventional biomarkers (procalcitonin (PCT), lactate, C-reactive …

[HTML][HTML] Rapid next-generation sequencing–based diagnostics of bacteremia in septic patients

C Grumaz, A Hoffmann, Y Vainshtein, M Kopp… - The Journal of Molecular …, 2020 - Elsevier
The increasing incidence of bloodstream infections including sepsis is a major challenge in
intensive care units worldwide. However, current diagnostics for pathogen identification …

Next-generation sequencing applications for the study of fungal pathogens

S Jiang, Y Chen, S Han, L Lv, L Li - Microorganisms, 2022 - mdpi.com
Next-generation sequencing (NGS) has become a widely used technology in biological
research. NGS applications for clinical pathogen detection have become vital technologies …

A novel approach for in vivo DNA footprinting using short double-stranded cell-free DNA from plasma

J Müller, C Hartwig, M Sonntag, L Bitzer… - Genome …, 2024 - genome.cshlp.org
Here, we present a method for enrichment of double-stranded cfDNA with an average length
of∼ 40 bp from cfDNA for high-throughput DNA sequencing. This class of cfDNA is enriched …

Metagenomics to assist in the diagnosis of bloodstream infection

AL Greninger, SN Naccache - The journal of applied laboratory …, 2019 - academic.oup.com
Background Metagenomic next-generation sequencing (mNGS) has emerged as a
promising technology that enables pan-pathogen detection from any source. However …