Function of lncRNAs and approaches to lncRNA-protein interactions
JJ Zhu, HJ Fu, YG Wu, XF Zheng - Science China Life Sciences, 2013 - Springer
Long non-coding RNAs (lncRNAs), which represent a new frontier in molecular biology, play
important roles in regulating gene expression at epigenetic, transcriptional and post …
important roles in regulating gene expression at epigenetic, transcriptional and post …
Bridging the gap between in vitro and in vivo RNA folding
Deciphering the folding pathways and predicting the structures of complex three-
dimensional biomolecules is central to elucidating biological function. RNA is single …
dimensional biomolecules is central to elucidating biological function. RNA is single …
RNAJP: enhanced RNA 3D structure predictions with non-canonical interactions and global topology sampling
RNA 3D structures are critical for understanding their functions. However, only a limited
number of RNA structures have been experimentally solved, so computational prediction …
number of RNA structures have been experimentally solved, so computational prediction …
[HTML][HTML] Predicting RNA secondary structures from sequence and probing data
RNA secondary structures have proven essential for understanding the regulatory functions
performed by RNA such as microRNAs, bacterial small RNAs, or riboswitches. This success …
performed by RNA such as microRNAs, bacterial small RNAs, or riboswitches. This success …
Computational analysis of conserved RNA secondary structure in transcriptomes and genomes
SR Eddy - Annual review of biophysics, 2014 - annualreviews.org
Transcriptomics experiments and computational predictions both enable systematic
discovery of new functional RNAs. However, many putative noncoding transcripts arise …
discovery of new functional RNAs. However, many putative noncoding transcripts arise …
[HTML][HTML] Novel evolutionary lineages revealed in the Chaetothyriales (Fungi) based on multigene phylogenetic analyses and comparison of ITS secondary structure
M Réblová, WA Untereiner, K Réblová - PLoS One, 2013 - journals.plos.org
Cyphellophora and Phialophora (Chaetothyriales, Pezizomycota) comprise species known
from skin infections of humans and animals and from a variety of environmental sources …
from skin infections of humans and animals and from a variety of environmental sources …
Comparison of the RNA Content of Extracellular Vesicles Derived from Paracoccidioides brasiliensis and Paracoccidioides lutzii
R Peres da Silva, LGV Longo, JPC Cunha… - Cells, 2019 - mdpi.com
Paracoccidioides brasiliensis and P. lutzii cause human paracoccidioidomycosis. We have
previously characterized the< 200-nt RNA sub-populations contained in fungal extracellular …
previously characterized the< 200-nt RNA sub-populations contained in fungal extracellular …
[HTML][HTML] Consolidation of Chloridium: new classification into eight sections with 37 species and reinstatement of the genera Gongromeriza and Psilobotrys
M Réblová, M Hernández-Restrepo, F Sklenář… - Studies in …, 2022 - ncbi.nlm.nih.gov
Chloridium is a little-studied group of soil-and wood-inhabiting dematiaceous hyphomycetes
that share a rare mode of phialidic conidiogenesis on multiple loci. The genus has …
that share a rare mode of phialidic conidiogenesis on multiple loci. The genus has …
Bioinformatics tools for lncRNA research
Current experimental methods to identify the functions of a large number of the candidates of
long non-coding RNAs (lncRNAs) are limited in their throughput. Therefore, it is essential to …
long non-coding RNAs (lncRNAs) are limited in their throughput. Therefore, it is essential to …
Phylogenetic Reassessment, Taxonomy, and Biogeography of Codinaea and Similar Fungi
The genus Codinaea is a phialidic, dematiaceous hyphomycete known for its intriguing
morphology and turbulent taxonomic history. This polyphasic study represents a new …
morphology and turbulent taxonomic history. This polyphasic study represents a new …