Tag-based approaches for transcriptome research and genome annotation

M Harbers, P Carninci - Nature methods, 2005 - nature.com
With the increasing number of whole genome sequences available, genomic research has
shifted toward the annotation of functional elements and transcribed regions. Thus, the …

BTA, a novel reagent for DNA attachment on glass and efficient generation of solid-phase amplified DNA colonies

M Fedurco, A Romieu, S Williams… - Nucleic acids …, 2006 - academic.oup.com
Abstract The tricarboxylate reagent benzene-1, 3, 5-triacetic acid (BTA) was used to attach
5′-aminated DNA primers and templates on an aminosilanized glass surface for …

Understanding SAGE data

SM Wang - Trends in genetics, 2007 - cell.com
Serial analysis of gene expression (SAGE) is a method for identifying and quantifying
transcripts from eukaryotic genomes. Since its invention, SAGE has been widely applied to …

The salt-responsive transcriptome of chickpea roots and nodules via deepSuperSAGE

C Molina, M Zaman-Allah, F Khan, N Fatnassi… - BMC plant biology, 2011 - Springer
Background The combination of high-throughput transcript profiling and next-generation
sequencing technologies is a prerequisite for genome-wide comprehensive transcriptome …

[HTML][HTML] Integrative analysis of Siglec-15 mRNA in human cancers based on data mining

Q Li, Z Huang, Y Chen, H Yao, Z Ke, X He, M Qiu… - Journal of …, 2020 - ncbi.nlm.nih.gov
Objective: Cancer is expected to be the leading cause of death worldwide within the 21st
century and is the single most important obstacle to extending life expectancy. Unfortunately …

[HTML][HTML] CD24 is a potential biomarker for prognosis in human breast carcinoma

X Jing, X Cui, H Liang, C Hao, Z Yang, X Li… - Cellular Physiology and …, 2018 - karger.com
Background/Aims: CD24 is a highly glycosylated mucin-like antigen on the cell surface,
which has recently emerged as a novel oncogene and metastasis promoter. We performed …

Transcriptional response of bronchial epithelial cells to Pseudomonas aeruginosa: identification of early mediators of host defense

JB Vos, MA van Sterkenburg, KF Rabe… - Physiological …, 2005 - journals.physiology.org
The airway epithelium responds to microbial exposure by altering expression of a variety of
genes to increase innate host defense. We aimed to delineate the early transcriptional …

Genome-wide allele-specific expression analysis using Massively Parallel Signature Sequencing (MPSS™) Reveals cis- and trans-effects on gene expression in …

M Guo, S Yang, M Rupe, B Hu, DR Bickel, L Arthur… - Plant Molecular …, 2008 - Springer
Allelic differences in expression are important genetic factors contributing to quantitative trait
variation in various organisms. However, the extent of genome-wide allele-specific …

Comparison of hybridization-based and sequencing-based gene expression technologies on biological replicates

F Liu, TK Jenssen, J Trimarchi, C Punzo, CL Cepko… - BMC genomics, 2007 - Springer
Background High-throughput systems for gene expression profiling have been developed
and have matured rapidly through the past decade. Broadly, these can be divided into two …

Transcription factor expression in lipopolysaccharide-activated peripheral-blood-derived mononuclear cells

JC Roach, KD Smith, KL Strobe… - Proceedings of the …, 2007 - National Acad Sciences
Transcription factors play a key role in integrating and modulating biological information. In
this study, we comprehensively measured the changing abundances of mRNAs over a time …