Clinical detection and categorization of uncommon and concomitant mutations involving BRAF

G Zheng, LH Tseng, G Chen, L Haley, P Illei, CD Gocke… - BMC cancer, 2015 - Springer
Background Selective BRAF inhibitors, vemurafenib and dabrafenib, and the MEK inhibitor,
trametinib, have been approved for treatment of metastatic melanomas with a BRAF p …

PUREE: accurate pan-cancer tumor purity estimation from gene expression data

E Revkov, T Kulshrestha, KWK Sung… - Communications …, 2023 - nature.com
Tumors are complex masses composed of malignant and non-malignant cells. Variation in
tumor purity (proportion of cancer cells in a sample) can both confound integrative analysis …

[HTML][HTML] Next-generation sequencing and fluorescence in situ hybridization have comparable performance characteristics in the analysis of pancreaticobiliary …

JC Dudley, Z Zheng, T McDonald, LP Le… - The Journal of Molecular …, 2016 - Elsevier
Cytological evaluation of pancreatic or biliary duct brushings is a specific, but insensitive,
test for malignancy. We compared adjunctive molecular testing with next-generation …

Molecular diagnostics for precision medicine in colorectal cancer: current status and future perspective

G Chen, Z Yang, JR Eshleman… - BioMed research …, 2016 - Wiley Online Library
Precision medicine, a concept that has recently emerged and has been widely discussed,
emphasizes tailoring medical care to individuals largely based on information acquired from …

[HTML][HTML] Automated tumor analysis for molecular profiling in lung cancer

PW Hamilton, Y Wang, C Boyd, JA James… - Oncotarget, 2015 - ncbi.nlm.nih.gov
The discovery and clinical application of molecular biomarkers in solid tumors, increasingly
relies on nucleic acid extraction from FFPE tissue sections and subsequent molecular …

[HTML][HTML] Performance characteristics of next-generation sequencing in clinical mutation detection of colorectal cancers

L Haley, LH Tseng, G Zheng, J Dudley, DA Anderson… - Modern Pathology, 2015 - Elsevier
Activating mutations in downstream genes of the epidermal growth factor receptor (EGFR)
pathway may cause anti-EGFR resistance in patients with colorectal cancers. We present …

Non-p.V600E BRAF Mutations Are Common Using a More Sensitive and Broad Detection Tool

J Carter, LH Tseng, G Zheng, J Dudley… - American journal of …, 2015 - academic.oup.com
Objectives: To assess the performance of a next-generation sequencing (NGS) platform for
the clinical detection of BRAF mutations. Methods: In this retrospective quality assessment of …

[HTML][HTML] Comprehensive genomic profiling of malignant effusions in patients with metastatic lung adenocarcinoma

SR Yang, CY Lin, H Stehr, SR Long, CS Kong… - The Journal of Molecular …, 2018 - Elsevier
Cytology samples are increasingly used for comprehensive molecular testing. Although fine-
needle aspirates are adequate substrates for high-throughput sequencing, the suitability of …

Molecular alterations in non–small cell lung carcinomas of the young

CJ VandenBussche, PB Illei, MT Lin, DS Ettinger… - Human pathology, 2014 - Elsevier
Lung cancer is the leading cause of cancer death in the United States. Gene alterations are
significant in lung tumorigenesis, with certain genes (Kristen rat sarcoma viral oncogene …

Tumour purity assessment with deep learning in colorectal cancer and impact on molecular analysis

LA Schoenpflug, A Chatzipli… - The Journal of …, 2024 - Wiley Online Library
Tumour content plays a pivotal role in directing the bioinformatic analysis of molecular
profiles such as copy number variation (CNV). In clinical application, tumour purity …