[HTML][HTML] From kill the winner to eliminate the winner in open phage-bacteria systems

A Marantos, N Mitarai, K Sneppen - PLoS Computational Biology, 2022 - journals.plos.org
Phages and bacteria manage to coexist and sustain ecosystems with a high diversity of
strains, despite limited resources and heavy predation. This diversity can be explained by …

[HTML][HTML] Sustainable diversity of phage-bacteria systems

N Mitarai, A Marantos, K Sneppen - Current Opinion in Systems Biology, 2023 - Elsevier
Bacteriophages are central to microbial ecosystems for balancing bacterial populations and
promoting evolution by applying strong selection pressure. Here, we review some of the …

[HTML][HTML] Biogeography and environmental conditions shape bacteriophage-bacteria networks across the human microbiome

GD Hannigan, MB Duhaime, D Koutra… - PLoS computational …, 2018 - journals.plos.org
Viruses and bacteria are critical components of the human microbiome and play important
roles in health and disease. Most previous work has relied on studying bacteria and viruses …

Heterogeneous viral strategies promote coexistence in virus-microbe systems

H Gulbudak, JS Weitz - Journal of theoretical biology, 2019 - Elsevier
Viral infections of microbial cells often culminate in lysis and the release of new virus
particles. However, viruses of microbes can also initiate chronic infections, in which new …

Inferring phage–bacteria infection networks from time-series data

LF Jover, J Romberg, JS Weitz - Royal Society Open …, 2016 - royalsocietypublishing.org
In communities with bacterial viruses (phage) and bacteria, the phage–bacteria infection
network establishes which virus types infect which host types. The structure of the infection …

[PDF][PDF] Population Dynamics of Phage-Bacteria Ecosystems under Challenging Conditions

A Marantos - 2023 - nbi.ku.dk
Bacteria and their viruses, bacteriophages (or phages), are arguably the most representative
biological organisms on planet Earth. Apart from being amongst the most ancient entities …

Spatially induced nestedness in a neutral model of phage-bacteria networks

S Valverde, SF Elena, R Solé - Virus Evolution, 2017 - academic.oup.com
Ecological networks, both displaying mutualistic or antagonistic interactions, seem to share
common structural traits: the presence of nestedness and modularity. A variety of model …

Conflicting attachment and the growth of bipartite networks

CY Leung, JS Weitz - Physical Review E, 2016 - APS
Simple growth mechanisms have been proposed to explain the emergence of seemingly
universal network structures. The widely studied model of preferential attachment assumes …

[PDF][PDF] Geoffrey D Hannigan1, Melissa B Duhaime2, Danai Koutra3, and Patrick D Schloss1

PD Schloss - scholar.archive.org
Viruses and bacteria are critical components of the human microbiome and play important
roles in health 49 and disease. Bacterial communities have been associated with disease …

[PDF][PDF] Infection networks, life-history traits, and dynamics in complex virus-microbe systems

LF Jover - 2016 - repository.gatech.edu
In 1989 Bergh et al. published a paper that drastically changed the way we perceive the
ecological importance of viruses and the role they play at a global scale. The premise of the …