Regulation by 3′-untranslated regions

C Mayr - Annual review of genetics, 2017 - annualreviews.org
3′-untranslated regions (3′-UTRs) are the noncoding parts of mRNAs. Compared to
yeast, in humans, median 3′-UTR length has expanded approximately tenfold alongside …

The nexus between RNA-binding proteins and their effectors

S He, E Valkov, S Cheloufi, J Murn - Nature Reviews Genetics, 2023 - nature.com
RNA-binding proteins (RBPs) regulate essentially every event in the lifetime of an RNA
molecule, from its production to its destruction. Whereas much has been learned about RNA …

Mass spectrometry of nucleic acid noncovalent complexes

E Largy, A Konig, A Ghosh, D Ghosh… - Chemical …, 2021 - ACS Publications
Nucleic acids have been among the first targets for antitumor drugs and antibiotics. With the
unveiling of new biological roles in regulation of gene expression, specific DNA and RNA …

Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins

K Kramer, T Sachsenberg, BM Beckmann, S Qamar… - Nature …, 2014 - nature.com
RNA-protein complexes play pivotal roles in many central biological processes. Although
methods based on high-throughput sequencing have advanced our ability to identify the …

Mechanisms of dendritic mRNA transport and its role in synaptic tagging

M Doyle, MA Kiebler - The EMBO journal, 2011 - embopress.org
The localization of RNAs critically contributes to many important cellular processes in an
organism, such as the establishment of polarity, asymmetric division and migration during …

Principles and roles of mRNA localization in animal development

C Medioni, K Mowry, F Besse - Development, 2012 - journals.biologists.com
Intracellular targeting of mRNAs has long been recognized as a means to produce proteins
locally, but has only recently emerged as a prevalent mechanism used by a wide variety of …

In-gel imaging of RNA processing using broccoli reveals optimal aptamer expression strategies

GS Filonov, CW Kam, W Song, SR Jaffrey - Chemistry & biology, 2015 - cell.com
RNA aptamers can be expressed in cells to influence and image cellular processes.
Aptamer folding is maintained by inserting the aptamers into highly structured RNA …

Translational control in cellular and developmental processes

J Kong, P Lasko - Nature Reviews Genetics, 2012 - nature.com
Growing evidence indicates that translational control of specific mRNAs contributes
importantly to genetic regulation across the breadth of cellular and developmental …

Kinesin-3 and dynein mediate microtubule-dependent co-transport of mRNPs and endosomes

S Baumann, T Pohlmann, M Jungbluth… - Journal of cell …, 2012 - journals.biologists.com
Long-distance transport of mRNAs is important in determining polarity in eukaryotes.
Molecular motors shuttle large ribonucleoprotein complexes (mRNPs) containing RNA …

RNA–protein interactions: an overview

A Re, T Joshi, E Kulberkyte, Q Morris… - RNA sequence, structure …, 2014 - Springer
RNA binding proteins (RBPs) are key players in the regulation of gene expression. In this
chapter we discuss the main protein–RNA recognition modes used by RBPs in order to …