Understudied proteins: opportunities and challenges for functional proteomics

G Kustatscher, T Collins, AC Gingras, T Guo… - Nature …, 2022 - nature.com
Most research aiming at understanding the molecular foundations of life and disease has
focused on a limited set of increasingly well-known proteins while the biological functions of …

Untangling the roles of TOP2A and TOP2B in transcription and cancer

L Uusküla-Reimand, MD Wilson - Science advances, 2022 - science.org
Type II topoisomerases (TOP2) are conserved regulators of chromatin topology that catalyze
reversible DNA double-strand breaks (DSBs) and are essential for maintaining genomic …

OpenCell: Endogenous tagging for the cartography of human cellular organization

NH Cho, KC Cheveralls, AD Brunner, K Kim… - Science, 2022 - science.org
Elucidating the wiring diagram of the human cell is a central goal of the postgenomic era.
We combined genome engineering, confocal live-cell imaging, mass spectrometry, and data …

[HTML][HTML] Dual proteome-scale networks reveal cell-specific remodeling of the human interactome

EL Huttlin, RJ Bruckner, J Navarrete-Perea, JR Cannon… - Cell, 2021 - cell.com
Thousands of interactions assemble proteins into modules that impart spatial and functional
organization to the cellular proteome. Through affinity-purification mass spectrometry, we …

Architecture of the human interactome defines protein communities and disease networks

EL Huttlin, RJ Bruckner, JA Paulo, JR Cannon, L Ting… - Nature, 2017 - nature.com
The physiology of a cell can be viewed as the product of thousands of proteins acting in
concert to shape the cellular response. Coordination is achieved in part through networks of …

Mass-spectrometric exploration of proteome structure and function

R Aebersold, M Mann - Nature, 2016 - nature.com
Numerous biological processes are concurrently and coordinately active in every living cell.
Each of them encompasses synthetic, catalytic and regulatory functions that are, almost …

Architecture of human mitochondrial respiratory megacomplex I2III2IV2

R Guo, S Zong, M Wu, J Gu, M Yang - Cell, 2017 - cell.com
The respiratory megacomplex represents the highest-order assembly of respiratory chain
complexes, and it allows mitochondria to respond to energy-requiring conditions. To …

The BioPlex network: a systematic exploration of the human interactome

EL Huttlin, L Ting, RJ Bruckner, F Gebreab, MP Gygi… - Cell, 2015 - cell.com
Protein interactions form a network whose structure drives cellular function and whose
organization informs biological inquiry. Using high-throughput affinity-purification mass …

Cross-linking mass spectrometry: methods and applications in structural, molecular and systems biology

FJ O'Reilly, J Rappsilber - Nature structural & molecular biology, 2018 - nature.com
Over the past decade, cross-linking mass spectrometry (CLMS) has developed into a robust
and flexible tool that provides medium-resolution structural information. CLMS data provide …

Evaluating the clinical validity of gene-disease associations: an evidence-based framework developed by the clinical genome resource

NT Strande, ER Riggs, AH Buchanan… - The American Journal of …, 2017 - cell.com
With advances in genomic sequencing technology, the number of reported gene-disease
relationships has rapidly expanded. However, the evidence supporting these claims varies …