A comprehensive review of computational cell cycle models in guiding cancer treatment strategies

C Ma, E Gurkan-Cavusoglu - NPJ Systems Biology and Applications, 2024 - nature.com
This article reviews the current knowledge and recent advancements in computational
modeling of the cell cycle. It offers a comparative analysis of various modeling paradigms …

Mammalian synthetic biology: emerging medical applications

Z Kis, HSA Pereira, T Homma… - Journal of The …, 2015 - royalsocietypublishing.org
In this review, we discuss new emerging medical applications of the rapidly evolving field of
mammalian synthetic biology. We start with simple mammalian synthetic biological …

Crosstalk between Plk1, p53, cell cycle, and G2/M DNA damage checkpoint regulation in cancer: computational modeling and analysis

Y Jung, P Kraikivski, S Shafiekhani… - npj Systems Biology …, 2021 - nature.com
Different cancer cell lines can have varying responses to the same perturbations or stressful
conditions. Cancer cells that have DNA damage checkpoint-related mutations are often …

Modelling the onset of senescence at the G1/S cell cycle checkpoint

JCM Mombach, CA Bugs, C Chaouiya - BMC genomics, 2014 - Springer
Background DNA damage (single or double-strand breaks) triggers adapted cellular
responses. These responses are elicited through signalling pathways, which activate cell …

Computational modeling of protracted HCMV replication using genome substrates and protein temporal profiles

CE Monti, RL Mokry, ML Schumacher… - Proceedings of the …, 2022 - National Acad Sciences
Human cytomegalovirus (HCMV) is a major cause of illness in immunocompromised
individuals. The HCMV lytic cycle contributes to the clinical manifestations of infection. The …

[HTML][HTML] TOPAS-Tissue: A Framework for the Simulation of the Biological Response to Ionizing Radiation at the Multi-Cellular Level

OR García García, R Ortiz, E Moreno-Barbosa… - International Journal of …, 2024 - mdpi.com
This work aims to develop and validate a framework for the multiscale simulation of the
biological response to ionizing radiation in a population of cells forming a tissue. We present …

Mechanisms that enhance sustainability of p53 pulses

JK Kim, TL Jackson - PloS one, 2013 - journals.plos.org
The tumor suppressor p53 protein shows various dynamic responses depending on the
types and extent of cellular stresses. In particular, in response to DNA damage induced by γ …

[PDF][PDF] A systems pharmacology approach for targeted study of potential inflammatory pathways and their genes in atherosclerosis

S Almowallad, R Jeet, M Mobashir - Jour. Bas. Sci, 2024 - researchgate.net
Atherosclerosis is a widespread and chronic progressive arterial disease that has been
regarded as one of the major causes of death worldwide. It is caused by the deposition of …

Modeling cellular noise underlying heterogeneous cell responses in the epidermal growth factor signaling pathway

K Iwamoto, Y Shindo, K Takahashi - PLoS computational biology, 2016 - journals.plos.org
Cellular heterogeneity, which plays an essential role in biological phenomena, such as drug
resistance and migration, is considered to arise from intrinsic (ie, reaction kinetics) and …

[PDF][PDF] ATM in focus: A damage sensor and cancer target

HS Khalil, H Tummala, N Zhelev - Biodiscovery, 2012 - biodiscovery.pensoft.net
The ability of a cell to conserve and maintain its native DNA sequence is fundamental for the
survival and normal functioning of the whole organism and protection from cancer …