Zygotic genome activation in vertebrates

D Jukam, SAM Shariati, JM Skotheim - Developmental cell, 2017 - cell.com
The first major developmental transition in vertebrate embryos is the maternal-to-zygotic
transition (MZT) when maternal mRNAs are degraded and zygotic transcription begins …

MicroRNA profiling: approaches and considerations

CC Pritchard, HH Cheng, M Tewari - Nature Reviews Genetics, 2012 - nature.com
MicroRNAs (miRNAs) are small RNAs that post-transcriptionally regulate the expression of
thousands of genes in a broad range of organisms in both normal physiological contexts …

KRAS-dependent sorting of miRNA to exosomes

DJ Cha, JL Franklin, Y Dou, Q Liu, JN Higginbotham… - Elife, 2015 - elifesciences.org
Mutant KRAS colorectal cancer (CRC) cells release protein-laden exosomes that can alter
the tumor microenvironment. To test whether exosomal RNAs also contribute to changes in …

Comprehensive circular RNA profiling reveals the regulatory role of the circRNA-100338/miR-141-3p pathway in hepatitis B-related hepatocellular carcinoma

XY Huang, ZL Huang, YH Xu, Q Zheng, Z Chen… - Scientific reports, 2017 - nature.com
Circular RNAs (circRNAs) represent a class of endogenous noncoding RNAs that have
recently been recognized as important regulators of gene expression and pathological …

[HTML][HTML] A comprehensive repertoire of tRNA-derived fragments in prostate cancer

M Olvedy, M Scaravilli, Y Hoogstrate, T Visakorpi… - Oncotarget, 2016 - ncbi.nlm.nih.gov
Prostate cancer (PCa) is the most common cancer among men in developed countries.
Although its genetic background is thoroughly investigated, rather little is known about the …

Global analyses of the dynamics of mammalian microRNA metabolism

ER Kingston, DP Bartel - Genome research, 2019 - genome.cshlp.org
Rates of production and degradation together specify microRNA (miRNA) abundance and
dynamics. Here, we used approach-to-steady-state metabolic labeling to assess these rates …

MicroRNA in teleost fish

TT Bizuayehu, I Babiak - Genome biology and evolution, 2014 - academic.oup.com
MicroRNAs (miRNAs) are transcriptional and posttranscriptional regulators involved in
nearly all known biological processes in distant eukaryotic clades. Their discovery and …

Integrated analysis of mRNA-seq and miRNA-seq in the liver of Pelteobagrus vachelli in response to hypoxia

G Zhang, S Yin, J Mao, F Liang, C Zhao, P Li, G Zhou… - Scientific reports, 2016 - nature.com
Pelteobagrus vachelli is a well-known commercial species in Asia. However, a sudden lack
of oxygen will result in mortality and eventually to pond turnover. Studying the molecular …

Dynamic regulation of the transcription initiation landscape at single nucleotide resolution during vertebrate embryogenesis

C Nepal, Y Hadzhiev, C Previti, V Haberle, N Li… - Genome …, 2013 - genome.cshlp.org
Spatiotemporal control of gene expression is central to animal development. Core promoters
represent a previously unanticipated regulatory level by interacting with cis-regulatory …

Age-driven modulation of tRNA-derived fragments in Drosophila and their potential targets

S Karaiskos, AS Naqvi, KE Swanson, A Grigoriev - Biology direct, 2015 - Springer
Background Development of sequencing technologies and supporting computation enable
discovery of small RNA molecules that previously escaped detection or were ignored due to …