Nuclear phylogenomics of angiosperms and insights into their relationships and evolution

G Zhang, H Ma - Journal of Integrative Plant Biology, 2024 - Wiley Online Library
Angiosperms (flowering plants) are by far the most diverse land plant group with over
300,000 species. The sudden appearance of diverse angiosperms in the fossil record was …

An empirical assessment of a single family‐wide hybrid capture locus set at multiple evolutionary timescales in Asteraceae

KE Jones, T Fér, RE Schmickl, RB Dikow… - Applications in Plant …, 2019 - Wiley Online Library
Premise Hybrid capture with high‐throughput sequencing (Hyb‐Seq) is a powerful tool for
evolutionary studies. The applicability of an Asteraceae family‐specific Hyb‐Seq probe set …

Plastid phylogenomics and cytonuclear discordance in Rubioideae, Rubiaceae

O Thureborn, N Wikström, SG Razafimandimbison… - Plos one, 2024 - journals.plos.org
In this study of evolutionary relationships in the subfamily Rubioideae (Rubiaceae), we take
advantage of the off-target proportion of reads generated via previous target capture …

A target enrichment probe set for resolving phylogenetic relationships in the coffee family, Rubiaceae

LD Ball, AM Bedoya, CM Taylor… - Applications in Plant …, 2023 - Wiley Online Library
Premise Rubiaceae is among the most species‐rich plant families, as well as one of the
most morphologically and geographically diverse. Currently available phylogenies have …

Phylogenomics and topological conflicts in the tribe Anthospermeae (Rubiaceae)

O Thureborn, N Wikström… - Ecology and …, 2024 - Wiley Online Library
Genome skimming (shallow whole‐genome sequencing) offers time‐and cost‐efficient
production of large amounts of DNA data that can be used to address unsolved evolutionary …

Phylogeny and classification of the coffee family (Rubiaceae, Gentianales): Overview and outlook

SG Razafimandimbison, C Rydin - Taxon, 2024 - Wiley Online Library
The use of molecular data in phylogenetic reconstruction during more than three decades
has greatly improved our understanding of the macroevolutionary history of the coffee family …

[HTML][HTML] New chromosome counts on Rubiaceae from Africa and the Western Indian Ocean islands

M Kiehn, A Berger - Nordic Journal of Botany, 2023 - Wiley Online Library
Cytological studies can provide important insights into circumscription and relationships
within plant groups. Nevertheless, there is a considerable lack of cytological information …

Metagenomics of African Empogona and Tricalysia (Rubiaceae) reveals the presence of leaf endophytes

B Verstraete, S Janssens, P De Block, P Asselman… - PeerJ, 2023 - peerj.com
Background Leaf symbiosis is a phenomenon in which host plants of Rubiaceae interact
with bacterial endophytes within their leaves. To date, it has been found in around 650 …

Calceolariaceae809: A bait set for targeted sequencing of nuclear loci

N Medina, DC Tank, A Espíndola - Applications in Plant …, 2023 - Wiley Online Library
Abstract Premise The genus Calceolaria (Calceolariaceae) is emblematic of the Andes, is
hypothesized to have originated as a recent, rapid radiation, and has important taxonomic …

Integrating genomic sequencing resources: an innovative perspective on recycling with universal Angiosperms353 probe sets

X Wang, T Xiong, Y Wang, X Zhang, M Sun - Horticulture Advances, 2024 - Springer
Sequencing strategies have continually advanced, with high-throughput sequencing (HTS)
technologies emerging as pivotal tools in plant phylogenomics. As a standard form of target …