The microbial ecology of Escherichia coli in the vertebrate gut

E Foster-Nyarko, MJ Pallen - FEMS microbiology reviews, 2022 - academic.oup.com
Escherichia coli has a rich history as biology's 'rock star', driving advances across many
fields. In the wild, E. coli resides innocuously in the gut of humans and animals but is also a …

Genomic and metagenomic technologies to explore the antibiotic resistance mobilome

JL Martínez, TM Coque, VF Lanza… - Annals of the New …, 2017 - Wiley Online Library
Antibiotic resistance is a relevant problem for human health that requires global approaches
to establish a deep understanding of the processes of acquisition, stabilization, and spread …

Carbapenemase-producing enterobacteriaceae recovered from a Spanish river ecosystem

N Piedra-Carrasco, A Fàbrega, W Calero-Cáceres… - PloS one, 2017 - journals.plos.org
The increasing resistance to carbapenems is an alarming threat in the fight against
multiresistant bacteria. The dissemination properties of antimicrobial resistance genes are …

High diversity and suggested endemicity of culturable Actinobacteria in an extremely oligotrophic desert oasis

HF Arocha-Garza, R Canales-Del Castillo, LE Eguiarte… - PeerJ, 2017 - peerj.com
The phylum Actinobacteria constitutes one of the largest and anciently divergent phyla
within the Bacteria domain. Actinobacterial diversity has been thoroughly researched in …

Genómica de poblaciones: nada en Evolución va a tener sentido si no es a la luz de la genómica, y nada en genómica tendrá sentido si no es a la luz de la evolución

LE Eguiarte, JA Aguirre-Liguori… - … en Ciencias Químico …, 2013 - medigraphic.com
La teoría de la genética de poblaciones surgió hace más de 80 años y nos permite explicar
los patrones de variación genética dentro y entre las poblaciones que forman a las especies …

Recombination Blurs Phylogenetic Groups Routine Assignment in Escherichia coli: Setting the Record Straight

MC Turrientes, JM Gonzalez-Alba, R del Campo… - PloS one, 2014 - journals.plos.org
The characterization of population structures plays a main role for understanding outbreaks
and the dynamics of bacterial spreading. In Escherichia coli, the widely used combination of …

A multilocus sequence analysis scheme for characterization of Flavobacterium columnare isolates

R Ashrafi, K Pulkkinen, LR Sundberg, N Pekkala… - BMC microbiology, 2015 - Springer
Background Columnaris disease caused by Flavobacterium columnare is a serious problem
in aquaculture, annually causing large economic losses around the world. Despite …

Genomic diversity of Escherichia coli from healthy children in rural Gambia

E Foster-Nyarko, NF Alikhan, UN Ikumapayi, G Sarwar… - PeerJ, 2021 - peerj.com
Little is known about the genomic diversity of Escherichia coli in healthy children from sub-
Saharan Africa, even though this is pertinent to understanding bacterial evolution and …

Inhibitor-resistant TEM-and OXA-1-producing Escherichia coli isolates resistant to amoxicillin-clavulanate are more clonal and possess lower virulence gene content …

J Oteo, JJ González-López, A Ortega… - Antimicrobial agents …, 2014 - Am Soc Microbiol
In a previous prospective multicenter study in Spain, we found that OXA-1 and inhibitor-
resistant TEM (IRT) β-lactamases constitute the most common plasmid-borne mechanisms …

Community Emergence of Cefixime-Resistant Escherichia coli Belonging to ST12 with Chromosomal AmpC Hyperproduction

G Zaragoza, M Pérez-Vázquez, L Villar-Gómara… - Antibiotics, 2024 - mdpi.com
Escherichia coli isolates that are resistant to cefixime and amoxicillin/clavulanic acid, but
apparently susceptible to cefuroxime, with no ESBL identified, were initially detected in …