Information bounds production in replicator systems

J Piñero, DR Sowinski, G Ghoshal, A Frank… - arXiv preprint arXiv …, 2024 - arxiv.org
We investigate minimal replicator systems that are able to use information in a functional
manner. Specifically, we consider a population of autocatalytic replicators in a flow reactor …

Polyhedral geometry and combinatorics of an autocatalytic ecosystem

P Gagrani, V Blanco, E Smith, D Baum - Journal of Mathematical …, 2024 - Springer
Developing a mathematical understanding of autocatalysis in reaction networks has both
theoretical and practical implications. We review definitions of autocatalytic networks and …

[PDF][PDF] Aces in spaces: Autocatalytic chemical ecosystems in spatial settings

AM Plum, DA Baum - arXiv preprint arXiv:2212.14445, 2022 - academia.edu
In models of prebiotic chemical evolution, spatial structure is frequently invoked to facilitate
the accumulation of complexity. Late in life's origins, spatial structure would have been …

An Open-Ended Approach to Understanding Local, Emergent Conservation Laws in Biological Evolution

AM Adams, E Jacopin, P Gagrani… - 2024 IEEE Congress …, 2024 - ieeexplore.ieee.org
While fields like Artificial Life have made huge strides in quantifying the mechanisms that
distinguish living systems from non-living ones, particular mechanisms remain difficult to …

The evolution of complexity and the transition to biochemical life

P Gagrani, D Baum - arXiv preprint arXiv:2407.11728, 2024 - arxiv.org
While modern physics and biology satisfactorily explain the passage from the Big Bang to
the formation of Earth and the first cells to present-day life, respectively, the origins of …

Valeriana alanyense (Caprifoliaceae): a new species from Southwest Anatolia (Turkey) based on morphological and molecular data

F YÜCEOL, Ö ÇEÇEN, RS GÖKTÜRK, E KAYA… - …, 2024 - phytotaxa.mapress.com
Valeriana alanyense a new species to science from Southwestern of Turkey, is described
and illustrated. The new species exhibits affinities to V. speluncaria and it differs from it in …

Parallelization of Gillespie algorithm based on binary words

D Lacoste, M Castellana - arXiv preprint arXiv:2412.16613, 2024 - arxiv.org
We present an improvement of the Gillespie Exact Stochastic Simulation Algorithm, which
leverages a bitwise representation of variables to perform independent simulations in …

From messy chemistry to ecology: autocatalysis and heritability in prebiotically plausible chemical systems

T Sokolskyi, BC Zuviria, S Gargulak, E Allen, D Baum - bioRxiv, 2024 - biorxiv.org
A key question in origins-of-life research, is whether heritability, and thus evolution, could
have preceded genes. While theoretical research has shown that out of equilibrium …

Towards Synthetic Life—Molecular Design of Complex Coacer-vates that Self-Divide

M Wenisch, MG Braun, L Eylert, F Späth, S Poprawa… - 2024 - chemrxiv.org
Complex coacervation occurs when oppositely charged polyelectrolytes interact, leading to
liquid-liquid phase separation. We coupled this phase separation to a fuel-driven reaction …

Thermodynamic consistency of autocatalytic cycles

T Kosc, D Kuperberg, E Rajon, S Charlat - bioRxiv, 2024 - biorxiv.org
Autocatalysis is seen as a potential key player in the origin of life, and perhaps more
generally in the emergence of Darwinian dynamics. Building on recent formalizations of this …