Simulating tissue mechanics with agent-based models: concepts, perspectives and some novel results

P Van Liedekerke, MM Palm, N Jagiella… - Computational particle …, 2015 - Springer
In this paper we present an overview of agent-based models that are used to simulate
mechanical and physiological phenomena in cells and tissues, and we discuss underlying …

A versatile pipeline for the multi-scale digital reconstruction and quantitative analysis of 3D tissue architecture

H Morales-Navarrete, F Segovia-Miranda, P Klukowski… - Elife, 2015 - elifesciences.org
A prerequisite for the systems biology analysis of tissues is an accurate digital three-
dimensional reconstruction of tissue structure based on images of markers covering multiple …

A quantitative high-resolution computational mechanics cell model for growing and regenerating tissues

P Van Liedekerke, J Neitsch, T Johann… - … and modeling in …, 2020 - Springer
Mathematical models are increasingly designed to guide experiments in biology,
biotechnology, as well as to assist in medical decision making. They are in particular …

Multiscale image analysis reveals structural heterogeneity of the cell microenvironment in homotypic spheroids

A Schmitz, SC Fischer, C Mattheyer, F Pampaloni… - Scientific reports, 2017 - nature.com
Three-dimensional multicellular aggregates such as spheroids provide reliable in vitro
substitutes for tissues. Quantitative characterization of spheroids at the cellular level is …

[PDF][PDF] Intravital dynamic and correlative imaging of mouse livers reveals diffusion‐dominated canalicular and flow‐augmented ductular bile flux

N Vartak, G Guenther, F Joly, A Damle‐Vartak… - …, 2021 - Wiley Online Library
Background and Aims Small‐molecule flux in tissue microdomains is essential for organ
function, but knowledge of this process is scant due to the lack of suitable methods. We …

Tumor cell load and heterogeneity estimation from diffusion-weighted MRI calibrated with histological data: an example from lung cancer

Y Yin, O Sedlaczek, B Müller, A Warth… - … on Medical Imaging, 2017 - ieeexplore.ieee.org
Diffusion-weighted magnetic resonance imaging (DWI) is a key non-invasive imaging
technique for cancer diagnosis and tumor treatment assessment, reflecting Brownian …

Digital twin demonstrates significance of biomechanical growth control in liver regeneration after partial hepatectomy

S Hoehme, S Hammad, J Boettger, B Begher-Tibbe… - Iscience, 2023 - cell.com
Partial liver removal is an important therapy option for liver cancer. In most patients within a
few weeks, the liver is able to fully regenerate. In some patients, however, regeneration fails …

Zonated quantification of steatosis in an entire mouse liver

LO Schwen, A Homeyer, M Schwier, U Dahmen… - Computers in biology …, 2016 - Elsevier
Many physiological processes and pathological conditions in livers are spatially
heterogeneous, forming patterns at the lobular length scale or varying across the organ …

Quantitative analysis of hepatic macro‐and microvascular alterations during cirrhogenesis in the rat

G Peeters, C Debbaut, A Friebel, P Cornillie… - Journal of …, 2018 - Wiley Online Library
Cirrhosis represents the end‐stage of any persistent chronically active liver disease. It is
characterized by the complete replacement of normal liver tissue by fibrosis, regenerative …

[PDF][PDF] Computational modelling of liver metabolism and its applications in research and the clinics

TC Tomaš, M Moškon, M Mraz, D Rozman - Acta Chim Slov, 2018 - academia.edu
Computational models of liver metabolism are gaining an increasing importance within the
research community. Moreover, their first clinical applications have been reported in recent …