Systems biology of cancer metastasis

Y Suhail, MP Cain, K Vanaja, PA Kurywchak… - Cell systems, 2019 - cell.com
Cancer metastasis is no longer viewed as a linear cascade of events but rather as a series
of concurrent, partially overlapping processes, as successfully metastasizing cells assume …

Synthetic lethality and cancer

NJ O'Neil, ML Bailey, P Hieter - Nature Reviews Genetics, 2017 - nature.com
A synthetic lethal interaction occurs between two genes when the perturbation of either gene
alone is viable but the perturbation of both genes simultaneously results in the loss of …

Genomic characterization of metastatic breast cancers

F Bertucci, CKY Ng, A Patsouris, N Droin, S Piscuoglio… - Nature, 2019 - nature.com
Metastasis is the main cause of death for patients with breast cancer. Many studies have
characterized the genomic landscape of breast cancer during its early stages. However …

Maftools: efficient and comprehensive analysis of somatic variants in cancer

A Mayakonda, DC Lin, Y Assenov, C Plass… - Genome …, 2018 - genome.cshlp.org
Numerous large-scale genomic studies of matched tumor-normal samples have established
the somatic landscapes of most cancer types. However, the downstream analysis of data …

The whole-genome landscape of medulloblastoma subtypes

PA Northcott, I Buchhalter, AS Morrissy, V Hovestadt… - Nature, 2017 - nature.com
Current therapies for medulloblastoma, a highly malignant childhood brain tumour, impose
debilitating effects on the developing child, and highlight the need for molecularly targeted …

Integrative analysis identifies four molecular and clinical subsets in uveal melanoma

AG Robertson, J Shih, C Yau, EA Gibb, J Oba… - Cancer cell, 2017 - cell.com
Comprehensive multiplatform analysis of 80 uveal melanomas (UM) identifies four
molecularly distinct, clinically relevant subtypes: two associated with poor-prognosis …

The molecular landscape of pediatric acute myeloid leukemia reveals recurrent structural alterations and age-specific mutational interactions

H Bolouri, JE Farrar, T Triche Jr, RE Ries, EL Lim… - Nature medicine, 2018 - nature.com
We present the molecular landscape of pediatric acute myeloid leukemia (AML) and
characterize nearly 1,000 participants in Children's Oncology Group (COG) AML trials. The …

Comprehensive molecular characterization of the hippo signaling pathway in cancer

Y Wang, X Xu, D Maglic, MT Dill, K Mojumdar, PKS Ng… - Cell reports, 2018 - cell.com
Hippo signaling has been recognized as a key tumor suppressor pathway. Here, we perform
a comprehensive molecular characterization of 19 Hippo core genes in 9,125 tumor …

The genomic and transcriptional landscape of primary central nervous system lymphoma

J Radke, N Ishaque, R Koll, Z Gu, E Schumann… - Nature …, 2022 - nature.com
Primary lymphomas of the central nervous system (PCNSL) are mainly diffuse large B-cell
lymphomas (DLBCLs) confined to the central nervous system (CNS). Molecular drivers of …

DriverDBv3: a multi-omics database for cancer driver gene research

SH Liu, PC Shen, CY Chen, AN Hsu… - Nucleic acids …, 2020 - academic.oup.com
An integrative multi-omics database is needed urgently, because focusing only on analysis
of one-dimensional data falls far short of providing an understanding of cancer. Previously …