Epigenetic regulation in metabolic diseases: mechanisms and advances in clinical study

YL Wu, ZJ Lin, CC Li, X Lin, SK Shan, B Guo… - … and Targeted Therapy, 2023 - nature.com
Epigenetics regulates gene expression and has been confirmed to play a critical role in a
variety of metabolic diseases, such as diabetes, obesity, non-alcoholic fatty liver disease …

TET-mediated active DNA demethylation: mechanism, function and beyond

X Wu, Y Zhang - Nature Reviews Genetics, 2017 - nature.com
In mammals, DNA methylation in the form of 5-methylcytosine (5mC) can be actively
reversed to unmodified cytosine (C) through TET dioxygenase-mediated oxidation of 5mC to …

Rapid and accurate alignment of nucleotide conversion sequencing reads with HISAT-3N

Y Zhang, C Park, C Bennett, M Thornton… - Genome …, 2021 - genome.cshlp.org
Sequencing technologies using nucleotide conversion techniques such as cytosine to
thymine in bisulfite-seq and thymine to cytosine in SLAM seq are powerful tools to explore …

Regulation of transposable elements by DNA modifications

Ö Deniz, JM Frost, MR Branco - Nature Reviews Genetics, 2019 - nature.com
Maintenance of genome stability requires control over the expression of transposable
elements (TEs), whose activity can have substantial deleterious effects on the host …

Bisulfite-free direct detection of 5-methylcytosine and 5-hydroxymethylcytosine at base resolution

Y Liu, P Siejka-Zielińska, G Velikova, Y Bi, F Yuan… - Nature …, 2019 - nature.com
Bisulfite sequencing has been the gold standard for mapping DNA modifications including 5-
methylcytosine (5mC) and 5-hydroxymethylcytosine (5hmC) for decades,,–. However, this …

The DNA methylation landscape in cancer

K Skvortsova, C Stirzaker, P Taberlay - Essays in biochemistry, 2019 - portlandpress.com
As one of the most abundant and well-studied epigenetic modifications, DNA methylation
plays an essential role in normal development and cellular biology. Global alterations to the …

Mapping the epigenetic modifications of DNA and RNA

LY Zhao, J Song, Y Liu, CX Song, C Yi - Protein & cell, 2020 - academic.oup.com
Over 17 and 160 types of chemical modifications have been identified in DNA and RNA,
respectively. The interest in understanding the various biological functions of DNA and RNA …

Function and information content of DNA methylation

D Schübeler - Nature, 2015 - nature.com
Cytosine methylation is a DNA modification generally associated with transcriptional
silencing. Factors that regulate methylation have been linked to human disease, yet how …

Transcription factors as readers and effectors of DNA methylation

H Zhu, G Wang, J Qian - Nature Reviews Genetics, 2016 - nature.com
Recent technological advances have made it possible to decode DNA methylomes at single-
base-pair resolution under various physiological conditions. Many aberrant or differentially …

Tumour hypoxia causes DNA hypermethylation by reducing TET activity

B Thienpont, J Steinbacher, H Zhao, F D'Anna… - Nature, 2016 - nature.com
Hypermethylation of the promoters of tumour suppressor genes represses transcription of
these genes, conferring growth advantages to cancer cells. How these changes arise is …