Revisiting life strategy concepts in environmental microbial ecology

A Ho, DP Di Lonardo… - FEMS microbiology …, 2017 - academic.oup.com
Microorganisms are physiologically diverse, possessing disparate genomic features and
mechanisms for adaptation (functional traits), which reflect on their associated life strategies …

Microdiversity shapes the traits, niche space, and biogeography of microbial taxa

AA Larkin, AC Martiny - Environmental microbiology reports, 2017 - Wiley Online Library
With rapidly improving sequencing technologies, scientists have recently gained the ability
to examine diverse microbial communities at high genomic resolution, revealing that both …

[HTML][HTML] Linking pangenomes and metagenomes: the Prochlorococcus metapangenome

TO Delmont, AM Eren - PeerJ, 2018 - peerj.com
Pangenomes offer detailed characterizations of core and accessory genes found in a set of
closely related microbial genomes, generally by clustering genes based on sequence …

Delineating ecologically significant taxonomic units from global patterns of marine picocyanobacteria

GK Farrant, H Doré… - Proceedings of the …, 2016 - National Acad Sciences
Prochlorococcus and Synechococcus are the two most abundant and widespread
phytoplankton in the global ocean. To better understand the factors controlling their …

Annual community patterns are driven by seasonal switching between closely related marine bacteria

CS Ward, CM Yung, KM Davis, SK Blinebry… - The ISME …, 2017 - academic.oup.com
Marine microbes exhibit seasonal cycles in community composition, yet the key drivers of
these patterns and microbial population fidelity to specific environmental conditions remain …

Viruses affect picocyanobacterial abundance and biogeography in the North Pacific Ocean

MCG Carlson, F Ribalet, I Maidanik, BP Durham… - Nature …, 2022 - nature.com
The photosynthetic picocyanobacteria Prochlorococcus and Synechococcus are models for
dissecting how ecological niches are defined by environmental conditions, but how …

Evolutionary mechanisms of long-term genome diversification associated with niche partitioning in marine picocyanobacteria

H Doré, GK Farrant, U Guyet, J Haguait… - Frontiers in …, 2020 - frontiersin.org
Marine picocyanobacteria of the genera Prochlorococcus and Synechococcus are the most
abundant photosynthetic organisms on Earth, an ecological success thought to be linked to …

NanoSIMS single cell analyses reveal the contrasting nitrogen sources for small phytoplankton

H Berthelot, S Duhamel, S L'helguen… - The ISME …, 2019 - academic.oup.com
Nitrogen (N) is a limiting nutrient in vast regions of the world's oceans, yet the sources of N
available to various phytoplankton groups remain poorly understood. In this study, we …

[HTML][HTML] Iroki: automatic customization and visualization of phylogenetic trees

RM Moore, AO Harrison, SM McAllister, SW Polson… - PeerJ, 2020 - peerj.com
Phylogenetic trees are an important analytical tool for evaluating community diversity and
evolutionary history. In the case of microorganisms, the decreasing cost of sequencing has …

Population genomics meets the taxonomy of cyanobacteria

P Dvořák, E Jahodářová, A Stanojković, S Skoupý… - Algal Research, 2023 - Elsevier
The emergence of cyanobacterial species (speciation) is driven by mutation, selection, gene
flow, and geographical and ecological isolation. Population genomics explores the process …