Importance of the 5′ regulatory region to bacterial synthetic biology applications

L Tietze, R Lale - Microbial Biotechnology, 2021 - Wiley Online Library
The field of synthetic biology is evolving at a fast pace. It is advancing beyond single‐gene
alterations in single hosts to the logical design of complex circuits and the development of …

Programming Escherichia coli to function as a digital display

J Shin, S Zhang, BS Der, AAK Nielsen… - Molecular systems …, 2020 - embopress.org
Synthetic genetic circuits offer the potential to wield computational control over biology, but
their complexity is limited by the accuracy of mathematical models. Here, we present …

Multiplex transcriptional characterizations across diverse bacterial species using cell‐free systems

SS Yim, NI Johns, J Park, ALC Gomes… - Molecular Systems …, 2019 - embopress.org
Cell‐free expression systems enable rapid prototyping of genetic programs in vitro.
However, current throughput of cell‐free measurements is limited by the use of channel …

Competitive dCas9 binding as a mechanism for transcriptional control

DA Anderson, CA Voigt - Molecular Systems Biology, 2021 - embopress.org
Abstract Catalytically dead Cas9 (dCas9) is a programmable transcription factor that can be
targeted to promoters through the design of small guide RNAs (sgRNAs), where it can …

Obtaining a series of native gradient promoter-5′-UTR sequences in Corynebacterium glutamicum ATCC 13032

N Li, W Zeng, S Xu, J Zhou - Microbial Cell Factories, 2020 - Springer
Background Corynebacterium glutamicum is an important industrial microorganism used for
the production of many valuable compounds, especially amino acids and their derivatives …

Performance prediction of fundamental transcriptional programs

PT Milner, Z Zhang, ZD Herde, NR Vedire… - ACS Synthetic …, 2023 - ACS Publications
Transcriptional programming leverages systems of engineered transcription factors to impart
decision-making (eg, Boolean logic) in chassis cells. The number of components used to …

Emergent digital bio-computation through spatial diffusion and engineered bacteria

AJH Fedorec, NJ Treloar, KY Wen, L Dekker… - Nature …, 2024 - nature.com
Biological computing is a promising field with potential applications in biosafety,
environmental monitoring, and personalized medicine. Here we present work on the design …

Unraveling the complex interplay of Fis and IHF through synthetic promoter engineering

LMO Monteiro, A Sanches-Medeiros… - … in Bioengineering and …, 2020 - frontiersin.org
Bacterial promoters are usually formed by multiple cis-regulatory elements recognized by a
plethora of transcriptional factors (TFs). From those, global regulators are key elements …

Multi-input drug-controlled switches of mammalian gene expression based on engineered nuclear hormone receptors

S Kretschmer, N Perry, Y Zhang… - ACS Synthetic …, 2023 - ACS Publications
Protein-based switches that respond to different inputs to regulate cellular outputs, such as
gene expression, are central to synthetic biology. For increased controllability, multi-input …

Design and evaluation of synthetic RNA-based incoherent feed-forward loop circuits

S Hong, D Jeong, J Ryan, M Foo, X Tang, J Kim - Biomolecules, 2021 - mdpi.com
RNA-based regulators are promising tools for building synthetic biological systems that
provide a powerful platform for achieving a complex regulation of transcription and …