Machine learning in preclinical drug discovery

DB Catacutan, J Alexander, A Arnold… - Nature Chemical …, 2024 - nature.com
Drug-discovery and drug-development endeavors are laborious, costly and time consuming.
These programs can take upward of 12 years and cost US $2.5 billion, with a failure rate of …

[HTML][HTML] Antimicrobial peptides: Opportunities and challenges in overcoming resistance

C Bucataru, C Ciobanasu - Microbiological Research, 2024 - Elsevier
Antibiotic resistance represents a global health threat, challenging the efficacy of traditional
antimicrobial agents and necessitating innovative approaches to combat infectious …

A guide to artificial intelligence for cancer researchers

R Perez-Lopez, N Ghaffari Laleh, F Mahmood… - Nature Reviews …, 2024 - nature.com
Artificial intelligence (AI) has been commoditized. It has evolved from a specialty resource to
a readily accessible tool for cancer researchers. AI-based tools can boost research …

The antibiotic resistance crisis and the development of new antibiotics

H Brüssow - Microbial Biotechnology, 2024 - Wiley Online Library
Abstract The Global Burden of Disease report of 2019 estimated 14 million infection‐related
deaths, making it the second leading cause of death after ischaemic heart disease. Bacterial …

Evaluating generalizability of artificial intelligence models for molecular datasets

Y Ektefaie, A Shen, D Bykova, MG Marin… - Nature Machine …, 2024 - nature.com
Deep learning has made rapid advances in modelling molecular sequencing data. Despite
achieving high performance on benchmarks, it remains unclear to what extent deep learning …

Pre-training with fractional denoising to enhance molecular property prediction

Y Ni, S Feng, X Hong, Y Sun, WY Ma, ZM Ma… - Nature Machine …, 2024 - nature.com
Deep learning methods have been considered promising for accelerating molecular
screening in drug discovery and material design. Due to the limited availability of labelled …

ADMETlab 3.0: an updated comprehensive online ADMET prediction platform enhanced with broader coverage, improved performance, API functionality and decision …

L Fu, S Shi, J Yi, N Wang, Y He, Z Wu… - Nucleic Acids …, 2024 - academic.oup.com
ADMETlab 3.0 is the second updated version of the web server that provides a
comprehensive and efficient platform for evaluating ADMET-related parameters as well as …

Artificial intelligence-guided design of lipid nanoparticles for pulmonary gene therapy

J Witten, I Raji, RS Manan, E Beyer, S Bartlett… - Nature …, 2024 - nature.com
Ionizable lipids are a key component of lipid nanoparticles, the leading nonviral messenger
RNA delivery technology. Here, to advance the identification of ionizable lipids beyond …

Unlocking the black box: an in-depth review on interpretability, explainability, and reliability in deep learning

E ŞAHiN, NN Arslan, D Özdemir - Neural Computing and Applications, 2024 - Springer
Deep learning models have revolutionized numerous fields, yet their decision-making
processes often remain opaque, earning them the characterization of “black-box” models …

An automatic end-to-end chemical synthesis development platform powered by large language models

Y Ruan, C Lu, N Xu, Y He, Y Chen, J Zhang… - Nature …, 2024 - nature.com
The rapid emergence of large language model (LLM) technology presents promising
opportunities to facilitate the development of synthetic reactions. In this work, we leveraged …