Successful 3D imaging of cleared biological samples with light sheet fluorescence microscopy

E Delage, T Guilbert, F Yates - Journal of Cell Biology, 2023 - rupress.org
In parallel with the development of tissue-clearing methods, over the last decade, light sheet
fluorescence microscopy has contributed to major advances in various fields, such as cell …

Spatiochemical characterization of the pancreas using mass spectrometry imaging and topological data analysis

H Derwae, M Nijs, A Geysels, E Waelkens… - Analytical …, 2023 - ACS Publications
Mass Spectrometry Imaging (MSI) is a technique used to identify the spatial distribution of
molecules in tissues. An MSI experiment results in large amounts of high dimensional data …

Blueprints from plane to space: outlook of next‐generation three‐dimensional histopathology

AL Yoshikawa, T Omura… - Cancer …, 2024 - Wiley Online Library
Here, we summarize the literature relevant to recent advances in three‐dimensional (3D)
histopathology in relation to clinical oncology, highlighting serial sectioning, tissue clearing …

LungVis 1.0: an automatic AI-powered 3D imaging ecosystem unveils spatial profiling of nanoparticle delivery and acinar migration of lung macrophages

L Yang, Q Liu, P Kumar, A Sengupta, A Farnoud… - Nature …, 2024 - nature.com
Targeted (nano-) drug delivery is essential for treating respiratory diseases, which are often
confined to distinct lung regions. However, spatio-temporal profiling of drugs or …

[HTML][HTML] Visualization of organ-specific lymphatic growth: an efficient approach to labeling molecular markers in cleared tissues

C Christ, Z Jakus - International Journal of Molecular Sciences, 2023 - mdpi.com
Organ-specific lymphatics are essential for the maintenance of healthy organ function and
lymphatic dysfunction can lead to the development of various diseases. However, the …

Deciphering the diversity and sequence of extracellular matrix and cellular spatial patterns in lung adenocarcinoma using topological data analysis

IHR Yoon, R Jenkins, E Colliver, H Zhang, D Novo… - bioRxiv, 2024 - biorxiv.org
Extracellular matrix (ECM) organization influences cancer development and progression. It
modulates the invasion of cancer cells and can hinder the access of immune cells to cancer …

Light-Sheet Microscopic Imaging of Whole-Mouse Vascular Network with Fluorescent Microsphere Perfusion

X Cao, X Li, M Li, J Sun, Z Gao, X Li, Q Li… - ACS Biomaterials …, 2024 - ACS Publications
Visualizing the whole vascular network system is crucial for understanding the pathogenesis
of specific diseases and devising targeted therapeutic interventions. Although the …

[HTML][HTML] Three-dimensional characteristics of T cells and vasculature in the development of mouse esophageal cancer

S Bi, Y Wu, N Ding, Y Zhou, H Liu, Y Weng, Q Song… - Iscience, 2024 - cell.com
Esophageal squamous cell carcinoma (ESCC) is a common malignancy, characterized by a
multistep pathogenic process regulated spatiotemporally within the esophageal epithelial …

ML-driven segmentation of microvascular features during histological examination of tissue-engineered vascular grafts

VV Danilov, VV Laptev, KY Klyshnikov… - … in Bioengineering and …, 2024 - frontiersin.org
Introduction The development of next-generation tissue-engineered medical devices such
as tissue-engineered vascular grafts (TEVGs) is a leading trend in translational medicine …

Deep learning-based vessel extraction in 3D confocal microscope images of cleared human glioma tissues

X Yang, D He, Y Li, C Li, X Wang, X Zhu… - Biomedical Optics …, 2024 - opg.optica.org
Comprehensive visualization and accurate extraction of tumor vasculature are essential to
study the nature of glioma. Nowadays, tissue clearing technology enables 3D visualization …