A proteomics sample metadata representation for multiomics integration and big data analysis

C Dai, A Füllgrabe, J Pfeuffer, EM Solovyeva… - Nature …, 2021 - nature.com
The amount of public proteomics data is rapidly increasing but there is no standardized
format to describe the sample metadata and their relationship with the dataset files in a way …

Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities

S Cohen-Boulakia, K Belhajjame, O Collin… - Future Generation …, 2017 - Elsevier
With the development of new experimental technologies, biologists are faced with an
avalanche of data to be computationally analyzed for scientific advancements and …

The FAIR Guiding Principles for scientific data management and stewardship

MD Wilkinson, M Dumontier, IJJ Aalbersberg… - Scientific data, 2016 - nature.com
There is an urgent need to improve the infrastructure supporting the reuse of scholarly data.
A diverse set of stakeholders—representing academia, industry, funding agencies, and …

The ontology for biomedical investigations

A Bandrowski, R Brinkman, M Brochhausen, MH Brush… - PloS one, 2016 - journals.plos.org
The Ontology for Biomedical Investigations (OBI) is an ontology that provides terms with
precisely defined meanings to describe all aspects of how investigations in the biological …

NASA GeneLab: interfaces for the exploration of space omics data

DC Berrios, J Galazka, K Grigorev… - Nucleic Acids …, 2021 - academic.oup.com
The mission of NASA's GeneLab database (https://genelab. nasa. gov/) is to collect, curate,
and provide access to the genomic, transcriptomic, proteomic and metabolomic (so-called …

[PDF][PDF] The FAIR Guiding Principles for scientific data management and stewardship

M Axton, A Baak, N Blomberg, JW Boiten… - Scientific data, 2016 - core.ac.uk
There is an urgent need to improve the infrastructure supporting the reuse of scholarly data.
A diverse set of stakeholders—representing academia, industry, funding agencies, and …

COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access

RM Salek, S Neumann, D Schober, J Hummel, K Billiau… - Metabolomics, 2015 - Springer
Metabolomics has become a crucial phenotyping technique in a range of research fields
including medicine, the life sciences, biotechnology and the environmental sciences. This …

Updates in metabolomics tools and resources: 2014–2015

BB Misra, JJJ van der Hooft - Electrophoresis, 2016 - Wiley Online Library
Data processing and interpretation represent the most challenging and time‐consuming
steps in high‐throughput metabolomic experiments, regardless of the analytical platforms …

SEEK: a systems biology data and model management platform

K Wolstencroft, S Owen, O Krebs, Q Nguyen… - BMC systems …, 2015 - Springer
Background Systems biology research typically involves the integration and analysis of
heterogeneous data types in order to model and predict biological processes. Researchers …

Deep learning in systems medicine

H Wang, E Pujos-Guillot, B Comte… - Briefings in …, 2021 - academic.oup.com
Abstract Systems medicine (SM) has emerged as a powerful tool for studying the human
body at the systems level with the aim of improving our understanding, prevention and …