Protein design and variant prediction using autoregressive generative models

JE Shin, AJ Riesselman, AW Kollasch… - Nature …, 2021 - nature.com
The ability to design functional sequences and predict effects of variation is central to protein
engineering and biotherapeutics. State-of-art computational methods rely on models that …

Antibody polyreactivity in health and disease: statu variabilis

JD Dimitrov, C Planchais, LT Roumenina… - The Journal of …, 2013 - journals.aai.org
An Ab molecule or a BCR that is able to bind multiple structurally unrelated Ags is defined as
polyreactive. Polyreactive Abs and BCRs constitute an important part of immune repertoires …

IgE autoreactivity in atopic dermatitis: paving the road for autoimmune diseases?

C Pellefigues - Antibodies, 2020 - mdpi.com
Atopic dermatitis (AD) is a common skin disease affecting 20% of the population beginning
usually before one year of age. It is associated with the emergence of allergen-specific IgE …

Accelerating protein design using autoregressive generative models

A Riesselman, JE Shin, A Kollasch, C McMahon… - BioRxiv, 2019 - biorxiv.org
A major biomedical challenge is the interpretation of genetic variation and the ability to
design functional novel sequences. Since the space of all possible genetic variation is …

VH‐VL interdomain dynamics observed by computer simulations and NMR

ML Fernández‐Quintero… - Proteins: Structure …, 2020 - Wiley Online Library
The relative orientation of the two variable domains, VH and VL, influences the shape of the
antigen binding site, that is, the paratope, and is essential to understand antigen specificity …

Clinical use and therapeutic potential of IVIG/SCIG, plasma-derived IgA or IgM, and other alternative immunoglobulin preparations

PJ Späth, C Schneider, S von Gunten - Archivum immunologiae et …, 2017 - Springer
Intravenous and subcutaneous immunoglobulin preparations, consisting of IgG class
antibodies, are increasingly used to treat a broad range of pathological conditions, including …

Carbohydrate-mimetic peptides for pan anti-tumor responses

T Kieber-Emmons, S Saha, A Pashov… - Frontiers in …, 2014 - frontiersin.org
Molecular mimicry is fundamental to biology and transcends to many disciplines ranging
from immune pathology to drug design. Structural characterization of molecular partners has …

Granulocyte death mediated by specific antibodies in intravenous immunoglobulin (IVIG)

S Graeter, HU Simon, S von Gunten - Pharmacological research, 2020 - Elsevier
Granulocytes are key effector cells of the innate immune system that cause substantial by-
stander tissue damage in a broad range of inflammatory disorders. Specific antibodies with …

Antigen binding by conformational selection in near-germline antibodies

RJ Blackler, S Müller-Loennies… - Journal of Biological …, 2022 - ASBMB
Conformational flexibility in antibody-combining sites has been hypothesized to facilitate
polyspecificity toward multiple unique epitopes and enable the limited germline repertoire to …

Antibody repertoire profiling with mimotope arrays

S Pashova, C Schneider, S von Gunten… - Human vaccines & …, 2017 - Taylor & Francis
Large-scale profiling and monitoring of antibody repertoires is possible through next
generation sequencing (NGS), phage display libraries and microarrays. These methods can …