Focus on your locus with a massively parallel reporter assay

JC McAfee, JL Bell, O Krupa, N Matoba… - Journal of …, 2022 - Springer
A growing number of variants associated with risk for neurodevelopmental disorders have
been identified by genome-wide association and whole genome sequencing studies. As …

Functional characterization of human genomic variation linked to polygenic diseases

T Fabo, P Khavari - Trends in Genetics, 2023 - cell.com
The burden of human disease lies predominantly in polygenic diseases. Since the early
2000s, genome-wide association studies (GWAS) have identified genetic variants and loci …

Integrative analyses highlight functional regulatory variants associated with neuropsychiatric diseases

MG Guo, DL Reynolds, CE Ang, Y Liu, Y Zhao… - Nature Genetics, 2023 - nature.com
Noncoding variants of presumed regulatory function contribute to the heritability of
neuropsychiatric disease. A total of 2,221 noncoding variants connected to risk for ten …

Massively parallel techniques for cataloguing the regulome of the human brain

KG Townsley, KJ Brennand, LM Huckins - Nature neuroscience, 2020 - nature.com
Complex brain disorders are highly heritable and arise from a complex polygenic risk
architecture. Many disease-associated loci are found in non-coding regions that house …

Genetic insights into immune mechanisms of Alzheimer's and Parkinson's disease

A Nott, IR Holtman - Frontiers in immunology, 2023 - frontiersin.org
Microglia, the macrophages of the brain, are vital for brain homeostasis and have been
implicated in a broad range of brain disorders. Neuroinflammation has gained traction as a …

Comprehensive mapping of genetic variation at Epromoters reveals pleiotropic association with multiple disease traits

J Wan, A van Ouwerkerk, JC Mouren… - Nucleic Acids …, 2024 - academic.oup.com
There is growing evidence that a wide range of human diseases and physiological traits are
influenced by genetic variation of cis-regulatory elements. We and others have shown that a …

High-throughput assays to assess variant effects on disease

K Ma, LO Gauthier, F Cheung… - Disease Models & …, 2024 - journals.biologists.com
Interpreting the wealth of rare genetic variants discovered in population-scale sequencing
efforts and deciphering their associations with human health and disease present a critical …

Massively parallel reporter assays: defining functional psychiatric genetic variants across biological contexts

B Mulvey, T Lagunas Jr, JD Dougherty - Biological psychiatry, 2021 - Elsevier
Neuropsychiatric phenotypes have long been known to be influenced by heritable risk
factors, directly confirmed by the past decade of genetic studies that have revealed specific …

Systematic investigation of allelic regulatory activity of schizophrenia-associated common variants

JC McAfee, S Lee, J Lee, JL Bell, O Krupa, J Davis… - Cell Genomics, 2023 - cell.com
Genome-wide association studies (GWASs) have successfully identified 145 genomic
regions that contribute to schizophrenia risk, but linkage disequilibrium makes it challenging …

Excitatory neurons derived from human-induced pluripotent stem cells show transcriptomic differences in Alzheimer's patients from controls

R Sagar, I Azoidis, C Zivko, A Xydia, ES Oh… - Cells, 2023 - mdpi.com
The recent advances in creating pluripotent stem cells from somatic cells and differentiating
them into a variety of cell types is allowing us to study them without the caveats associated …