Clustering algorithms in biomedical research: a review

R Xu, DC Wunsch - IEEE reviews in biomedical engineering, 2010 - ieeexplore.ieee.org
Applications of clustering algorithms in biomedical research are ubiquitous, with typical
examples including gene expression data analysis, genomic sequence analysis, biomedical …

EGASP: the human ENCODE genome annotation assessment project

R Guigó, P Flicek, JF Abril, A Reymond, J Lagarde… - Genome biology, 2006 - Springer
Background We present the results of EGASP, a community experiment to assess the state-
of-the-art in genome annotation within the ENCODE regions, which span 1% of the human …

[图书][B] Clustering

R Xu, D Wunsch - 2008 - books.google.com
This is the first book to take a truly comprehensive look at clustering. It begins with an
introduction to cluster analysis and goes on to explore: proximity measures; hierarchical …

The UCSC genome browser database: update 2006

AS Hinrichs, D Karolchik, R Baertsch… - Nucleic acids …, 2006 - academic.oup.com
Abstract The University of California Santa Cruz Genome Browser Database (GBD) contains
sequence and annotation data for the genomes of about a dozen vertebrate species and …

VR Juggler: A virtual platform for virtual reality application development

A Bierbaum, C Just, P Hartling… - … IEEE virtual reality …, 2001 - ieeexplore.ieee.org
Today, scientists and engineers are exploring advanced applications and uses of immersive
systems that can be cost-effectively applied in their fields. However, one of the impediments …

A general definition and nomenclature for alternative splicing events

M Sammeth, S Foissac, R Guigó - PLoS computational biology, 2008 - journals.plos.org
Understanding the molecular mechanisms responsible for the regulation of the
transcriptome present in eukaryotic cells is one of the most challenging tasks in the …

hsp70 genes in the human genome: Conservation and differentiation patterns predict a wide array of overlapping and specialized functions

L Brocchieri, E Conway de Macario… - BMC evolutionary biology, 2008 - Springer
Background Hsp70 chaperones are required for key cellular processes and response to
environmental changes and survival but they have not been fully characterized yet. The …

The abundance of short proteins in the mammalian proteome

MC Frith, AR Forrest, E Nourbakhsh, KC Pang… - PLoS …, 2006 - journals.plos.org
Short proteins play key roles in cell signalling and other processes, but their abundance in
the mammalian proteome is unknown. Current catalogues of mammalian proteins exhibit an …

Onco-proteogenomics: cancer proteomics joins forces with genomics

JA Alfaro, A Sinha, T Kislinger, PC Boutros - Nature methods, 2014 - nature.com
The complexities of tumor genomes are rapidly being uncovered, but how they are regulated
into functional proteomes remains poorly understood. Standard proteomics workflows use …

Evolution of alternative splicing after gene duplication

Z Su, J Wang, J Yu, X Huang, X Gu - Genome research, 2006 - genome.cshlp.org
Alternative splicing and gene duplication are two major sources of proteomic function
diversity. Here, we study the evolutionary trend of alternative splicing after gene duplication …