Machine learning-assisted structure annotation of natural products based on MS and NMR data

G Hu, M Qiu - Natural Product Reports, 2023 - pubs.rsc.org
Covering: up to March 2023Machine learning (ML) has emerged as a popular tool for
analyzing the structures of natural products (NPs). This review presents a summary of the …

Advances in the Application of Artificial Intelligence-Based Spectral Data Interpretation: A Perspective

X Xue, H Sun, M Yang, X Liu, HY Hu, Y Deng… - Analytical …, 2023 - ACS Publications
The interpretation of spectral data, including mass, nuclear magnetic resonance, infrared,
and ultraviolet–visible spectra, is critical for obtaining molecular structural information. The …

MSNovelist: de novo structure generation from mass spectra

MA Stravs, K Dührkop, S Böcker, N Zamboni - Nature Methods, 2022 - nature.com
Current methods for structure elucidation of small molecules rely on finding similarity with
spectra of known compounds, but do not predict structures de novo for unknown compound …

[HTML][HTML] A guide to the identification of metabolites in NMR-based metabonomics/metabolomics experiments

AC Dona, M Kyriakides, F Scott, EA Shephard… - Computational and …, 2016 - Elsevier
Metabonomics/metabolomics is an important science for the understanding of biological
systems and the prediction of their behaviour, through the profiling of metabolites. Two …

High resolution mass spectrometry based techniques at the crossroads of metabolic pathways

C Junot, F Fenaille, B Colsch… - Mass spectrometry …, 2014 - Wiley Online Library
The metabolome is the set of small molecular mass compounds found in biological media,
and metabolomics, which refers to as the analysis of metabolome in a given biological …

PredRet: prediction of retention time by direct mapping between multiple chromatographic systems

J Stanstrup, S Neumann, U Vrhovsek - Analytical chemistry, 2015 - ACS Publications
Demands in research investigating small molecules by applying untargeted approaches
have been a key motivator for the development of repositories for mass spectrometry spectra …

Using fragmentation trees and mass spectral trees for identifying unknown compounds in metabolomics

A Vaniya, O Fiehn - TrAC Trends in Analytical Chemistry, 2015 - Elsevier
Identification of unknown metabolites is the bottleneck in advancing metabolomics, leaving
interpretation of metabolomics results ambiguous. The chemical diversity of metabolism is …

Secondary metabolomics: the impact of mass spectrometry-based approaches on the discovery and characterization of microbial natural products

D Krug, R Müller - Natural Product Reports, 2014 - pubs.rsc.org
Covering: up to the end of 2013 The in-depth analysis of secondary metabolomes of many
microbes offers tremendous opportunities for the discovery of novel natural products which …

[HTML][HTML] Human metabolomics: strategies to understand biology

R Ramautar, R Berger, J van der Greef… - Current opinion in …, 2013 - Elsevier
Highlights•Metabolomics provides a functional read-out of the physiological status of an
organism.•A precise (dynamic) description of the clinical phenotype is missing for complex …

Non-targeted screening approaches for contaminants and adulterants in food using liquid chromatography hyphenated to high resolution mass spectrometry

AM Knolhoff, TR Croley - Journal of Chromatography A, 2016 - Elsevier
The majority of analytical methods for food safety monitor the presence of a specific
compound or defined set of compounds. Non-targeted screening methods are …