Is target-based drug discovery efficient? Discovery and “off-target” mechanisms of all drugs

A Sadri - Journal of medicinal chemistry, 2023 - ACS Publications
Target-based drug discovery is the dominant paradigm of drug discovery; however, a
comprehensive evaluation of its real-world efficiency is lacking. Here, a manual systematic …

Causal reductionism and causal structures

M Grasso, L Albantakis, JP Lang, G Tononi - Nature neuroscience, 2021 - nature.com
Causal reductionism is the widespread assumption that there is no room for additional
causes once we have accounted for all elementary mechanisms within a system. Due to its …

[图书][B] Transfer entropy

T Bossomaier, L Barnett, M Harré, JT Lizier… - 2016 - Springer
Transfer Entropy Page 1 Chapter 4 Transfer Entropy In this chapter we get to the essential
mathematics of the book—a detailed discussion of transfer entropy. To begin with we look at …

JIDT: An information-theoretic toolkit for studying the dynamics of complex systems

JT Lizier - Frontiers in Robotics and AI, 2014 - frontiersin.org
Complex systems are increasingly being viewed as distributed information processing
systems, particularly in the domains of computational neuroscience, bioinformatics, and …

A statistical framework for neuroimaging data analysis based on mutual information estimated via a gaussian copula

RAA Ince, BL Giordano, C Kayser… - Human brain …, 2017 - Wiley Online Library
We begin by reviewing the statistical framework of information theory as applicable to
neuroimaging data analysis. A major factor hindering wider adoption of this framework in …

Measuring information-transfer delays

M Wibral, N Pampu, V Priesemann, F Siebenhühner… - PloS one, 2013 - journals.plos.org
In complex networks such as gene networks, traffic systems or brain circuits it is important to
understand how long it takes for the different parts of the network to effectively influence one …

[HTML][HTML] Linking neurons to network function and behavior by two-photon holographic optogenetics and volumetric imaging

M Dal Maschio, JC Donovan, TO Helmbrecht, H Baier - Neuron, 2017 - cell.com
We introduce a flexible method for high-resolution interrogation of circuit function, which
combines simultaneous 3D two-photon stimulation of multiple targeted neurons, volumetric …

Improved measures of integrated information

M Tegmark - PLoS computational biology, 2016 - journals.plos.org
Although there is growing interest in measuring integrated information in computational and
cognitive systems, current methods for doing so in practice are computationally unfeasible …

Transfer entropy in neuroscience

M Wibral, R Vicente, M Lindner - Directed information measures in …, 2014 - Springer
Abstract Information transfer is a key component of information processing, next to
information storage and modification. Information transfer can be measured by a variety of …

Efficient transfer entropy analysis of non-stationary neural time series

P Wollstadt, M Martínez-Zarzuela, R Vicente… - PloS one, 2014 - journals.plos.org
Information theory allows us to investigate information processing in neural systems in terms
of information transfer, storage and modification. Especially the measure of information …