Comparing three notions of discrete Ricci curvature on biological networks

M Pouryahya, J Mathews, A Tannenbaum - arXiv preprint arXiv …, 2017 - arxiv.org
In the present work, we study the properties of biological networks by applying analogous
notions of fundamental concepts in Riemannian geometry and optimal mass transport to …

Bakry–Émery–Ricci curvature: an alternative network geometry measure in the expanding toolbox of graph Ricci curvatures

M Mondal, A Samal, F Münch… - Journal of Complex …, 2024 - academic.oup.com
The characterization of complex networks with tools originating in geometry, for instance
through the statistics of so-called Ricci curvatures, is a well established tool of network …

Characterizing cancer drug response and biological correlates: a geometric network approach

M Pouryahya, JH Oh, JC Mathews, JO Deasy… - Scientific reports, 2018 - nature.com
In the present work, we apply a geometric network approach to study common biological
features of anticancer drug response. We use for this purpose the panel of 60 human cell …

Bakry–Émery curvature sharpness and curvature flow in finite weighted graphs: implementation

D Cushing, S Kamtue, S Liu, F Münch, N Peyerimhoff… - Axioms, 2023 - mdpi.com
In this paper, we discuss the implementation of a curvature flow on weighted graphs based
on the Bakry–Émery calculus. This flow can be adapted to preserve the Markovian property …

Bakry-\'Emery curvature sharpness and curvature flow in finite weighted graphs. I. Theory

D Cushing, S Kamtue, S Liu, F Münch… - arXiv preprint arXiv …, 2022 - arxiv.org
In this sequence of two papers, we introduce a curvature flow on (mixed) weighted graphs
which is based on the Bakry-\'Emery calculus. The flow is described via a time-continuous …

Measuring robustness of brain networks in autism spectrum disorder with Ricci curvature

AK Simhal, KLH Carpenter, S Nadeem, J Kurtzberg… - Scientific reports, 2020 - nature.com
Ollivier–Ricci curvature is a method for measuring the robustness of connections in a
network. In this work, we use curvature to measure changes in robustness of brain networks …

Bakry–Émery Ricci Curvature Bounds for Doubly Warped Products of Weighted Spaces

Z Fathi, S Lakzian - The Journal of Geometric Analysis, 2022 - Springer
We introduce a notion of doubly warped product of weighted graphs that is consistent with
the doubly warped product in the Riemannian setting. We establish various discrete Bakry …

[PDF][PDF] Geometric graph measures for textures classification

V Barkanass, W Chen, N Lei, E Saucan - 2023 - researchgate.net
We propose a discrete curvature based approach to the intelligence and classification of
textures in images, with special emphasis on natural ones. We make appeal to a number of …

Quantifying Differences in Gene Networks via Graph Curvature

V Sundström - 2019 - diva-portal.org
Fast improvements of technologies for the acquirement of large genomic data through single
cell RNA-sequencing have led to a need for new mathematical methods for the analysis of …

Discrete Ricci Curvature for the Analysis of Biological Networks

M Pouryahya - 2018 - search.proquest.com
In this study, we adopted a discrete analogous notion of Ricci curvature in a Riemannian
manifold to infer certain robustness properties of networks of interest. We explored three …