Stochastic gene expression in proliferating cells: Differing noise intensity in single-cell and population perspectives

Z Zhang, I Zabaikina, C Nieto, Z Vahdat, P Bokes… - …, 2024 - pmc.ncbi.nlm.nih.gov
Random fluctuations (noise) in gene expression can be studied from two complementary
perspectives: following expression in a single cell over time or comparing expression …

Optimisation of gene expression noise for cellular persistence against lethal events

P Bokes, A Singh - Journal of Theoretical Biology, 2025 - Elsevier
Bacterial cell persistence, crucial for survival under adverse conditions like antibiotic
exposure, is intrinsically linked to stochastic fluctuations in gene expression. Certain genes …

Comparing negative feedback mechanisms in gene expression: From single cells to cell populations

Z Zhang, C Nieto, A Singh - 2023 62nd IEEE Conference on …, 2023 - ieeexplore.ieee.org
Negative feedback regulation is a well-known motif for suppressing deleterious fluctuations
in gene product levels. We systematically compare two scenarios where negative feedback …

[PDF][PDF] Precision of Biomolecular Timekeeping Through Regulated Degradation

S Rezaee, C Nieto, A Singh - 2023 - osf.io
The timing of biochemical processes within cells is inextricably linked to the level of key
regulatory proteins crossing critical threshold levels. Recent research has primarily focused …

Hysteresis and noise floor in gene expression optimised for persistence against lethal events

P Bokes, A Singh - bioRxiv, 2024 - biorxiv.org
Bacterial cell persistence, crucial for survival under adverse conditions like antibiotic
exposure, is intrinsically linked to stochastic fluctuations in gene expression. Certain genes …

[PDF][PDF] Controlling Biomolecular Timekeeping via Regulated Gene Product Degradation

S Rezaee, C Nieto, A Singh - css.paperplaza.net
Numerous biological timing mechanisms are associated with the duration required for key
regulatory molecules to reach critical threshold levels. Recent studies have mainly explored …

Feedback on dilution in stochastic gene expression: a comparative study of single-cell and population frameworks

I Zabaikina, P Bokes, A Singh - PROBASTAT 2024, 2024 - um.sav.sk
We consider a protein that negatively regulates the rate with which a cell grows. Since less
growth means less protein dilution, this mechanism forms a positive feedback loop on the …

Hybrid gene expression models

I Zabaikina - iam.fmph.uniba.sk
Regulation of gene expression is represented by a variety of control motifs, mathematical
models of which can provide a theoretical estimate of the process parameters. In this project …