Molecular dynamics simulations of membrane permeability

RM Venable, A Kramer, RW Pastor - Chemical reviews, 2019 - ACS Publications
This Review illustrates the evaluation of permeability of lipid membranes from molecular
dynamics (MD) simulation primarily using water and oxygen as examples. Membrane …

Mechanistic understanding from molecular dynamics in pharmaceutical research 2: lipid membrane in drug design

T Róg, M Girych, A Bunker - Pharmaceuticals, 2021 - mdpi.com
We review the use of molecular dynamics (MD) simulation as a drug design tool in the
context of the role that the lipid membrane can play in drug action, ie, the interaction …

Chronic alcohol metabolism results in DNA repair infidelity and cell cycle‐induced senescence in neurons

JKL Sun, D Wu, GCN Wong, TM Lau, M Yang… - Aging cell, 2023 - Wiley Online Library
Chronic binge‐like drinking is a risk factor for age‐related dementia, however, the lasting
and irreversible effect of alcohol on the brain remains elusive. Transcriptomic changes in …

Ultrafast and Reversible Superwettability Switching of 3D Graphene Foams via Solvent-Exclusive Plasma Treatments

S Cheon, WJ Cho, GR Yi, B Kang, SS Oh - ACS nano, 2024 - ACS Publications
For highly active electron transfer and ion diffusion, controlling the surface wettability of
electrically and thermally conductive 3D graphene foams (3D GFs) is required. Here, we …

Wrapping–Trapping versus Extraction Mechanism of Bactericidal Activity of MoS2 Nanosheets against Staphylococcus aureus Bacterial Membrane

M Kumari, HK Kashyap - Langmuir, 2023 - ACS Publications
The promising broad-spectrum antibacterial activity of two-dimensional molybdenum
disulfide (2D MoS2) has been widely recognized in the past decade. However, a …

Stability of Cytoplasmic Membrane of Escherichia coli Bacteria in Aqueous and Ethanolic Environment

Shobhna, A Dutta, P Kumari, HK Kashyap - Langmuir, 2024 - ACS Publications
The mechanism of action of any antibacterial agent or disinfectant depends largely on their
interaction with the bacterial membrane. Herein, we use the SPICA (surface property fitting …

Molecular structure of sphingomyelin in fluid phase bilayers determined by the joint analysis of small-angle neutron and X-ray scattering data

M Doktorova, N Kučerka, JJ Kinnun… - The Journal of …, 2020 - ACS Publications
We have determined the fluid bilayer structure of palmitoyl sphingomyelin (PSM) and
stearoyl sphingomyelin (SSM) by simultaneously analyzing small-angle neutron and X-ray …

Deciphering ethanol-driven swelling, rupturing, aggregation, and fusion of lipid vesicles using coarse-grained molecular dynamics simulations

Shobhna, HK Kashyap - Langmuir, 2022 - ACS Publications
Traditionally, liquid ethanol is known to enhance the permeability of lipid membranes and
causes vesicle aggregation and fusion. However, how the amphiphilic ethanol molecules …

Initial defect product on immiscible mixture of palm oil: Ethanol by amphiphilic chitosan/Zeolite LTA as optimization of microemulsion fuel

MR Asrori, A Santoso, S Sumari - Industrial Crops and Products, 2022 - Elsevier
Microemulsion fuels have involved oil, alcohol, surfactant, and cosurfactant/amphiphilic
molecule. A system of chemical reactions takes place between phase boundaries. Palm oil …

Permeabilization of the cell wall of Chlorella sorokiniana by the chitosan-degrading protease papain

K Brückner, C Griehl - Algal Research, 2023 - Elsevier
To enhance the nutritional value of Chlorella microalgae for use in food and feed, it is crucial
to improve the bioavailability of nutrients and bioactive compounds from whole-cell biomass …