Recent developments in structure-based drug design

G Klebe - Journal of molecular medicine, 2000 - Springer
Structure-based design has emerged as a new tool in medicinal chemistry. A prerequisite for
this new approach is an understanding of the principles of molecular recognition in protein …

Protein–protein interactions: developing small-molecule inhibitors/stabilizers through covalent strategies

B Lucero, KR Francisco, LJ Liu, CR Caffrey… - Trends in …, 2023 - cell.com
The development of small-molecule inhibitors or stabilizers of selected protein–protein
interactions (PPIs) of interest holds considerable promise for the development of research …

Environment-sensitive fluorescent turn-on probes targeting hydrophobic ligand-binding domains for selective protein detection.

YD Zhuang, PY Chiang, CW Wang… - Angewandte …, 2013 - search.ebscohost.com
Protein-specific detection or imaging is important in medical diagnosis to detect protein
biomarkers, as well as in biology to investigate cellular processes. Small-molecule …

GRID/CPCA: a new computational tool to design selective ligands

MA Kastenholz, M Pastor, G Cruciani… - Journal of Medicinal …, 2000 - ACS Publications
We present a computational procedure aimed at understanding enzyme selectivity and
guiding the design of drugs with respect to selectivity. It starts from a set of 3D structures of …

Factorising ligand affinity: a combined thermodynamic and crystallographic study of trypsin and thrombin inhibition

F Dullweber, MT Stubbs, Đ Musil… - Journal of molecular …, 2001 - Elsevier
The binding of a series of low molecular weight ligands towards trypsin and thrombin has
been studied by isothermal titration calorimetry and protein crystallography. In a series of …

Characterization of protein–ligand interactions by SABRE

R Mandal, P Pham, C Hilty - Chemical Science, 2021 - pubs.rsc.org
Nuclear spin hyperpolarization through signal amplification by reversible exchange
(SABRE), the non-hydrogenative version of para-hydrogen induced polarization, is …

APIF: a new interaction fingerprint based on atom pairs and its application to virtual screening

VI Pérez-Nueno, O Rabal, JI Borrell… - Journal of chemical …, 2009 - ACS Publications
A new interaction fingerprint (IF) called APIF (atom-pairs-based interaction fingerprint) has
been developed for postprocessing protein− ligand docking results. Unlike other existing …

Collection of bioactive reference compounds for focused library design

P Schneider, G Schneider - QSAR & Combinatorial Science, 2003 - Wiley Online Library
A collection of reference molecules for ligand‐based library design was compiled from the
recent scientific literature. Selected properties of this set of 4,236 drugs and drug candidates …

Affinity enhancement of protein ligands by reversible covalent modification of neighboring lysine residues

A Dal Corso, M Catalano, A Schmid… - Angewandte Chemie …, 2018 - Wiley Online Library
The discovery of protein ligands, capable of forming a reversible covalent bond with amino
acid residues on a protein target of interest, may represent a general strategy for the …

Understanding binding affinity: a combined isothermal titration calorimetry/molecular dynamics study of the binding of a series of hydrophobically modified …

R Talhout, A Villa, AE Mark… - Journal of the American …, 2003 - ACS Publications
The binding of a series of p-alkylbenzamidinium chloride inhibitors to the serine proteinase
trypsin over a range of temperatures has been studied using isothermal titration (micro) …