Inferring microbiota functions from taxonomic genes: a review

C Djemiel, PA Maron, S Terrat, S Dequiedt… - …, 2022 - academic.oup.com
Deciphering microbiota functions is crucial to predict ecosystem sustainability in response to
global change. High-throughput sequencing at the individual or community level has …

Metagenomics: An effective approach for exploring microbial diversity and functions

NN Nam, HDK Do, KT Loan Trinh, NY Lee - Foods, 2023 - mdpi.com
Various fields have been identified in the “omics” era, such as genomics, proteomics,
transcriptomics, metabolomics, phenomics, and metagenomics. Among these …

Patterns in soil microbial diversity across Europe

M Labouyrie, C Ballabio, F Romero, P Panagos… - Nature …, 2023 - nature.com
Factors driving microbial community composition and diversity are well established but the
relationship with microbial functioning is poorly understood, especially at large scales. We …

[HTML][HTML] The ecological clusters of soil organisms drive the ecosystem multifunctionality under long-term fertilization

YF Wang, P Chen, FH Wang, WX Han, M Qiao… - Environment …, 2022 - Elsevier
Long-term fertilization is known to impact the biodiversity and community structures of soil
organisms, which are responsible for multiple soil ecosystem functions (multifunctionality) …

[HTML][HTML] Microbial functional assemblages predicted by the FAPROTAX analysis are impacted by physicochemical properties, but C, N and S cycling genes are not in …

Z Yang, C Peng, H Cao, J Song, B Gong, L Li… - Ecological …, 2022 - Elsevier
Mangroves and their global significance in climate change based on the storage of blue
carbon and release of CO 2, CH 4, and N 2 O have attracted great attention. Microbial …

Nitrogen, manganese, iron, and carbon resource acquisition are potential functions of the wild rice Oryza rufipogon core rhizomicrobiome

J Chang, L Tian, MFA Leite, Y Sun, S Shi, S Xu, J Wang… - Microbiome, 2022 - Springer
Background The assembly of the rhizomicrobiome, ie, the microbiome in the soil adhering to
the root, is influenced by soil conditions. Here, we investigated the core rhizomicrobiome of …

Discrepant responses of bacterial community and enzyme activities to conventional and biodegradable microplastics in paddy soil

Z Zhang, W Wang, J Liu, H Wu - Science of the Total Environment, 2024 - Elsevier
The prevalence of microplastics in soil ecosystems has raised concerns about their potential
effects on soil properties. As promising alternatives to conventional plastics, biodegradable …

FungalTraits vs. FUNGuild: comparison of ecological functional assignments of leaf-and needle-associated fungi across 12 temperate tree species

B Tanunchai, L Ji, SA Schroeter, SFM Wahdan… - Microbial ecology, 2023 - Springer
Recently, a new annotation tool “FungalTraits” was created based on the previous FUNGuild
and FunFun databases, which has attracted high attention in the scientific community. These …

Organic vs. conventional: impact of cultivation treatments on the soil microbiota in the vineyard

A Colautti, M Civilini, M Contin, E Celotti… - Frontiers in …, 2023 - frontiersin.org
The aim of this study was to compare the effects of two vineyard management practices on
the soil and its associated microbiota. The experiments were conducted in two adjacent …

Enhanced denitrification of the AO-MBBR system used for expressway service area sewage treatment: A new perspective on decentralized wastewater treatment

X Xing, X Yuan, Y Zhang, C Men, Z Zhang… - Journal of …, 2023 - Elsevier
Decentralized wastewater treatment warrants considerable development in numerous
countries and regions. Owing to the unique characteristics of high ammonia nitrogen …