Evaluation of FluSight influenza forecasting in the 2021–22 and 2022–23 seasons with a new target laboratory-confirmed influenza hospitalizations

SM Mathis, AE Webber, TM León, EL Murray… - Nature …, 2024 - nature.com
Accurate forecasts can enable more effective public health responses during seasonal
influenza epidemics. For the 2021–22 and 2022–23 influenza seasons, 26 forecasting …

Scoring epidemiological forecasts on transformed scales

NI Bosse, S Abbott, A Cori… - PLoS computational …, 2023 - journals.plos.org
Forecast evaluation is essential for the development of predictive epidemic models and can
inform their use for public health decision-making. Common scores to evaluate …

Generative Bayesian modeling to nowcast the effective reproduction number from line list data with missing symptom onset dates

A Lison, S Abbott, J Huisman… - PLOS Computational …, 2024 - journals.plos.org
The time-varying effective reproduction number R t is a widely used indicator of transmission
dynamics during infectious disease outbreaks. Timely estimates of R t can be obtained from …

Best practices for estimating and reporting epidemiological delay distributions of infectious diseases

K Charniga, SW Park, AR Akhmetzhanov… - PLoS computational …, 2024 - journals.plos.org
Epidemiological delays are key quantities that inform public health policy and clinical
practice. They are used as inputs for mathematical and statistical models, which in turn can …

Prediction uncertainty validation for computational chemists

P Pernot - The Journal of Chemical Physics, 2022 - pubs.aip.org
Validation of prediction uncertainty (PU) is becoming an essential task for modern
computational chemistry. Designed to quantify the reliability of predictions in meteorology …

Multi‐model prediction of West Nile virus neuroinvasive disease with machine learning for identification of important regional climatic drivers

KM Holcomb, JE Staples, RJ Nett, CB Beard… - …, 2023 - Wiley Online Library
West Nile virus (WNV) is the leading cause of mosquito‐borne illness in the continental
United States (CONUS). Spatial heterogeneity in historical incidence, environmental factors …

Human judgement forecasting of COVID-19 in the UK

NI Bosse, S Abbott, J Bracher… - Wellcome Open …, 2024 - pmc.ncbi.nlm.nih.gov
Background In the past, two studies found ensembles of human judgement forecasts of
COVID-19 to show predictive performance comparable to ensembles of computational …

Challenges of COVID-19 Case Forecasting in the US, 2020–2021

VK Lopez, EY Cramer, R Pagano… - PLoS computational …, 2024 - journals.plos.org
During the COVID-19 pandemic, forecasting COVID-19 trends to support planning and
response was a priority for scientists and decision makers alike. In the United States, COVID …

Bayesian calibration of stochastic agent based model via random forest

C Robertson, C Safta, N Collier, J Ozik… - arXiv preprint arXiv …, 2024 - arxiv.org
Agent-based models (ABM) provide an excellent framework for modeling outbreaks and
interventions in epidemiology by explicitly accounting for diverse individual interactions and …

Forecasting influenza hospital admissions within English sub-regions using hierarchical generalised additive models

J Mellor, R Christie, CE Overton, RS Paton… - Communications …, 2023 - nature.com
Background Seasonal influenza places a substantial burden annually on healthcare
services. Policies during the COVID-19 pandemic limited the transmission of seasonal …