Neutrophils and emergency granulopoiesis drive immune suppression and an extreme response endotype during sepsis

AJ Kwok, A Allcock, RC Ferreira, E Cano-Gamez… - Nature …, 2023 - nature.com
Sepsis arises from diverse and incompletely understood dysregulated host response
processes following infection that leads to life-threatening organ dysfunction. Here we …

[HTML][HTML] Multimodal analysis of composition and spatial architecture in human squamous cell carcinoma

AL Ji, AJ Rubin, K Thrane, S Jiang, DL Reynolds… - Cell, 2020 - cell.com
To define the cellular composition and architecture of cutaneous squamous cell carcinoma
(cSCC), we combined single-cell RNA sequencing with spatial transcriptomics and …

[HTML][HTML] Osteopontin expression identifies a subset of recruited macrophages distinct from Kupffer cells in the fatty liver

A Remmerie, L Martens, T Thoné, A Castoldi… - Immunity, 2020 - cell.com
Metabolic-associated fatty liver disease (MAFLD) represents a spectrum of disease states
ranging from simple steatosis to non-alcoholic steatohepatitis (NASH). Hepatic …

Single-cell metabolic profiling of human cytotoxic T cells

FJ Hartmann, D Mrdjen, E McCaffrey, DR Glass… - Nature …, 2021 - nature.com
Cellular metabolism regulates immune cell activation, differentiation and effector functions,
but current metabolic approaches lack single-cell resolution and simultaneous …

Transitional dendritic cells are distinct from conventional DC2 precursors and mediate proinflammatory antiviral responses

FB Sulczewski, RA Maqueda-Alfaro… - Nature …, 2023 - nature.com
High-dimensional approaches have revealed heterogeneity amongst dendritic cells (DCs),
including a population of transitional DCs (tDCs) in mice and humans. However, the origin …

Human microglia regional heterogeneity and phenotypes determined by multiplexed single-cell mass cytometry

C Böttcher, S Schlickeiser, MAM Sneeboer… - Nature …, 2019 - nature.com
Microglia, the specialized innate immune cells of the CNS, play crucial roles in neural
development and function. Different phenotypes and functions have been ascribed to rodent …

[HTML][HTML] CyTOF workflow: differential discovery in high-throughput high-dimensional cytometry datasets

M Nowicka, C Krieg, HL Crowell, LM Weber… - …, 2017 - ncbi.nlm.nih.gov
High-dimensional mass and flow cytometry (HDCyto) experiments have become a method
of choice for high-throughput interrogation and characterization of cell populations. Here, we …

Reproducibility of flow cytometry through standardization: opportunities and challenges

T Kalina - Cytometry Part A, 2020 - Wiley Online Library
There is an agreement in the field that interlaboratory reproducibility of flow cytometry
measurements as well as the whole studies might be improved by a consensual use of …

Combined protein and nucleic acid imaging reveals virus-dependent B cell and macrophage immunosuppression of tissue microenvironments

S Jiang, CN Chan, X Rovira-Clavé, H Chen, Y Bai… - Immunity, 2022 - cell.com
Understanding the mechanisms of HIV tissue persistence necessitates the ability to visualize
tissue microenvironments where infected cells reside; however, technological barriers limit …

Mass cytometry for the assessment of immune reconstitution after hematopoietic stem cell transplantation

L Stern, H McGuire, S Avdic, S Rizzetto… - Frontiers in …, 2018 - frontiersin.org
Mass cytometry, or Cytometry by Time-Of-Flight, is a powerful new platform for high-
dimensional single-cell analysis of the immune system. It enables the simultaneous …