Cell–cell interactions orchestrate organismal development, homeostasis and single-cell
functions. When cells do not properly interact or improperly decode molecular messages …

Many publicly available data repositories and resources have been developed to support
protein-related information management, data-driven hypothesis generation, and biological …

Motivation Genome sequencing projects have revealed frequent gains and losses of genes
between species. Previous versions of our software, Computational Analysis of gene Family …

BRAKER is a pipeline for highly accurate and fully automated gene prediction in novel
eukaryotic genomes. It combines two major tools: GeneMark-ES/ET and AUGUSTUS …

Genomics promises comprehensive surveying of genomes and metagenomes, but rapidly
changing technologies and expanding data volumes make evaluation of completeness a …

Butterflies and moths (Lepidoptera) are one of the major superradiations of insects,
comprising nearly 160,000 described extant species. As herbivores, pollinators, and prey …

Summary Hymenoptera (sawflies, wasps, ants, and bees) are one of four mega-diverse
insect orders, comprising more than 153,000 described and possibly up to one million …

Horizontal gene transfer (HGT) is an important evolutionary force shaping prokaryotic and
eukaryotic genomes. HGT-acquired genes have been sporadically reported in insects, a …

Identifying homology relationships between sequences is fundamental to biological
research. Here we provide a novel orthogroup inference algorithm called OrthoFinder that …

Motivation: Genomics has revolutionized biological research, but quality assessment of the
resulting assembled sequences is complicated and remains mostly limited to technical …