Clustering in complex directed networks

G Fagiolo - Physical Review E—Statistical, Nonlinear, and Soft …, 2007 - APS
Many empirical networks display an inherent tendency to cluster, ie, to form circles of
connected nodes. This feature is typically measured by the clustering coefficient (CC). The …

Generalizations of the clustering coefficient to weighted complex networks

J Saramäki, M Kivelä, JP Onnela, K Kaski… - Physical Review E …, 2007 - APS
The recent high level of interest in weighted complex networks gives rise to a need to
develop new measures and to generalize existing ones to take the weights of links into …

Proteomics in 2002: a year of technical development and wide-ranging applications

D Figeys - Analytical chemistry, 2003 - ACS Publications
The term proteome was coined in the mid 1990s (1). A proteome is the ensemble of proteins
related to a genome. Proteomics is the study of the proteome. Proteomics has seen a …

Core-periphery detection in hypergraphs

F Tudisco, DJ Higham - SIAM Journal on Mathematics of Data Science, 2023 - SIAM
Core-periphery detection is a key task in exploratory network analysis where one aims to
find a core, a set of nodes well connected internally and with the periphery, and a periphery …

[图书][B] Multiplex networks: basic formalism and structural properties

The concept of network served for a long time as a metaphor supporting a structural
approach, ie, an approach that puts the accent on the relations among the constituents of a …

[PDF][PDF] Algorithmic aspects of triangle-based network analysis

T Schank - 2007 - publikationen.bibliothek.kit.edu
A network consists of nodes and edges between those nodes. Figure 1.1 (a) depicts a
network with 6 nodes and 11 edges. Many relations in our daily life can be modeled as …

Review of uses of network and graph theory concepts within proteomics

P Grindrod, M Kibble - Expert review of proteomics, 2004 - Taylor & Francis
The size and nature of data collected on gene and protein interactions has led to a rapid
growth of interest in graph theory and modern techniques for describing, characterizing and …

Structure of triadic relations in multiplex networks

E Cozzo, M Kivelä, M De Domenico… - New Journal of …, 2015 - iopscience.iop.org
Recent advances in the study of networked systems have highlighted that our
interconnected world is composed of networks that are coupled to each other through …

Fitting a geometric graph to a protein–protein interaction network

DJ Higham, M Rašajski, N Pržulj - Bioinformatics, 2008 - academic.oup.com
Motivation: Finding a good network null model for protein–protein interaction (PPI) networks
is a fundamental issue. Such a model would provide insights into the interplay between …

Regional and sectoral structures of the Chinese economy: A network perspective from multi-regional input–output tables

T Wang, S Xiao, J Yan, P Zhang - Physica A: Statistical Mechanics and Its …, 2021 - Elsevier
A multi-regional input–output table (MRIOT) containing the transactions among the region-
sectors in an economy defines a weighted and directed network. Using network analysis …